PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03746.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 291aa    MW: 31289.4 Da    PI: 7.6951
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03746.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.94.4e-304106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+++p++     p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q+
  Pahal.E03746.1   4 SCNGCRVLRKGCSDTCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLITAGPENVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQS 98 
                     6*************************99******************************************************************* PP

          DUF260  91 kaelallk 98 
                     ++e +l++
  Pahal.E03746.1  99 AVESVLRG 106
                     *9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.4E-921287IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.3033109IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDTCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLITAGPEN  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPAATAVP  120
PLRTCDIRHV ARRQGQADQG AVAAAALHRM ANSSRGQFKR SGAHRSAAGC DSAIELVFSQ  180
PSAAMLVDVR QAQPLNWAPR QPSHEYSGSH DTVPETDSNA SVDTVEVSHV SQSEPEPPRE  240
SDERADGLDL TLGLSPTVHK TEPSDFDDVQ PCHRGEPVKL GLAMADSRVR *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005021e-150FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818644.10.0LOB domain-containing protein 42-like
TrEMBLA0A2S3HXH90.0A0A2S3HXH9_9POAL; Uncharacterized protein
STRINGPavir.J11724.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-64LOB domain-containing protein 41