PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03650.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 222aa    MW: 23578.6 Da    PI: 9.1758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03650.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-104087654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                    +e+Er+RR++++s   +L +l+Pk     +s+  ++    L +A  YIk+L
  Pahal.E03650.3 40 KEIERKRRQQMKSLCVKLASLIPKeE---YSRDaMTQLGSLDEAAAYIKKL 87
                    79**********************55...88888***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.5883487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1239102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-43991No hitNo description
SMARTSM003532.7E-64093IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-74087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-1140104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEMGAKKKSR SSDTATAGKR SSTSNNSSGG GATTPAVERK EIERKRRQQM KSLCVKLASL  60
IPKEEYSRDA MTQLGSLDEA AAYIKKLKER VDELQQKRSS AQLMAAATSG GVGGSAASTS  120
AASGSARSEG AAAEEAAEAP LVEVVHHQDD SSLDVVLISS VERPFKLHEV VTVLEEEGAE  180
IINANLSVTG RKIFHTIHCR AFSPRIGIEV SRVSERLRAL V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247ERKRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967962.16e-89PREDICTED: uncharacterized protein LOC101783784
RefseqXP_012701638.16e-89PREDICTED: uncharacterized protein LOC101783784
TrEMBLK3XLV83e-87K3XLV8_SETIT; Uncharacterized protein
STRINGSi002881m9e-87(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-11bHLH family protein