PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03259.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 618aa    MW: 66256 Da    PI: 6.5149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03259.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16368414455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Pahal.E03259.1 368 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 414
                     5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.65E-17361418No hitNo description
SuperFamilySSF474591.83E-20362423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20368422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13368414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MSDGNEFAEL LWENGQAVVH GRRKQPPQTS LPPFNCGAGS SSRAQEKQPG GDPVALLKTG  60
GVFGAGGLAP SFHDFSSGLD ASRDNGDLDD TVPWIHYPII EEDTAEPALA DSYSPDFFSE  120
LHAAAVAATN LGSLPPPVQH TTNNRSNPVA TTSREPEPSK EIHRLPIPGP ATRPEPQAEF  180
AATKQPRLGG GGEGLMNFSL FSRPAAMARA SLQNAQRPPQ TGTDKVSNVT TSTRVESTVL  240
QSASGPRTAP VFTEQRTAWS QQPREVRFSC TAAPTAGNLQ QEMPRDRLGS MTLQKKVETR  300
KAPEAAVATS SVCSGNGAGT GNDESWRQHK RKSQAECSAS QDDDLEDESG GMRRSGSRGT  360
KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQMM  420
SMGSGLCIPP MLLPPTMQHL QIPPIAHFPH LGMGLGYGMG VFDMNSTPAV PFPSMPGAHF  480
PCPMIPGTPP QGLGMPVRNT VPMFGLPGQA IHPSASSVQP FPSLAGLPVR PNLPPQVSAA  540
MANMVQEQQQ DVATQQQQNM NNEARRGTNT GDPELQTIPQ VENQHFSVPS SAQTESGQFL  600
DSGNNRTDTA GRNGPET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817917.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A2S3HW500.0A0A2S3HW50_9POAL; Uncharacterized protein
STRINGPavir.Ea01048.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-44phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]