PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01084.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 224aa    MW: 23972.1 Da    PI: 6.4274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01084.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-1065105954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri ++f  Lr+l+P        K++ +++Le+A++Y+k L
  Pahal.E01084.1  65 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 105
                     699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.31356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1461121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.38E-1462110No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1262116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-1362111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-765105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEPYHYQQAV YDPRGFPMIH PQPYLHHPAA AGALSDTRVR GGGGGGGVRR RPGAKLSTDP  60
QSVAARERRH RISDRFRVLR SLVPGGSKMD TVSMLEQAIH YVKFLKAQVS LHQAALMQHE  120
EGCPAELAAA YSAVAGAGEL TLASSCRAAA CEEVVMQLQQ VPLQEAMSYD VSAPRLHGLD  180
PGPQMSGGHE LPPLPSCVFV EEPAACYSAC DLDEGETDLH GSY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9753891e-124EU975389.1 Zea mays clone 489377 mRNA sequence.
GenBankBT0626491e-124BT062649.1 Zea mays full-length cDNA clone ZM_BFb0328D03 mRNA, complete cds.
GenBankAY6830021e-124AY683002.1 Zea mays cultivar OH43 barren stalk1 (BA1) mRNA, complete cds.
GenBankAY6830011e-124AY683001.1 Zea mays cultivar B73 barren stalk1 (BA1) gene, complete cds.
GenBankKJ7268881e-124KJ726888.1 Zea mays clone pUT3430 bHLH transcription factor (bHLH67) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970450.11e-106PREDICTED: transcription factor LAX PANICLE-like
SwissprotQ7XAQ62e-61LAX_ORYSJ; Transcription factor LAX PANICLE
TrEMBLK3XRH81e-106K3XRH8_SETIT; Uncharacterized protein
STRINGSi004520m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-26APRATAXIN-like