PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00535.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 488aa    MW: 51057 Da    PI: 6.5085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00535.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09292339455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Pahal.E00535.1 292 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 339
                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16286357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-10286343No hitNo description
PROSITE profilePS5088815.256288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16290356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6292339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MNCGPPDQLP PASAPSAPSC FLNLNWDQSM AAAAAGDHLD PALSSMVSSP ASNSTAAAAT  60
DGLALHGISP QPQYGGTPLS SPPKLNLSMM GQFHHYQPPQ VGGAGPGGLP ILENLMPMGH  120
LDQFLADPGF AERAARLSGF DGRPGGSGYG GAVPGQFGLP DAGPVGALKE LELGNGRDES  180
SVSDPASASA EMALKGPSDG NAKKRKASGK GKGKDGPGST AAKDPAKEES SGKRCKSADE  240
SNGAEDNSGK GKAAQSNSEN GGKKQGKDTS KPPEPPKDYI HVRARRGEAT DSHSLAERVR  300
REKISQRMKL LQDLVPGCNK VVGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLDFNN  360
LPNLLPKDIH QSCGPMQNSH FPLETSGAPL PYLNQSHQGS PLGCSLTNGM DNQSNMHPLD  420
PAFCRQMNSQ HPFLNGVSDA ASQVGTFWQD DLQSVVHMDI GQGQEIAATS SNSYNGSLQT  480
VHMKMEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971039.10.0PREDICTED: transcription factor bHLH77-like
TrEMBLK3XH710.0K3XH71_SETIT; Uncharacterized protein
STRINGSi001242m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-63bHLH family protein