PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02567.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 463aa    MW: 50662.8 Da    PI: 6.6005
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02567.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.7e-33652221128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                     lp+G++F+Ptd+el+ e+L++kv+  +        ++++   i+   +i++++P++Lp  ++++  + +fF++ +k+y+tg+rk+r+        
  Pahal.D02567.1  65 LPAGVKFDPTDQELI-EHLQAKVRPGSaaapshplIDEFIPtIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTGTRKRRKiqppaada 157
                     799************.99*****9999777775553333333776646**********.455566799******************88******* PP

             NAM  78 .............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   ++ +W++tgk+++v++  g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Pahal.D02567.1 158 ssssapaaqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRRPEKTNWVMHQYHL 222
                     *******99998755789************.9999**********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-3659241IPR003441NAC domain
PROSITE profilePS5100530.12965241IPR003441NAC domain
PfamPF023653.0E-1566222IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGSWQQGELQ ATAMDGAAAA GAGSGGGDHR LIGLRIEEYG KYISDSTCCP QCGHKIDRKL  60
DWVGLPAGVK FDPTDQELIE HLQAKVRPGS AAAPSHPLID EFIPTIEGED GICYTHPEKL  120
PGLTKDGLSR HFFHRPSKAY TTGTRKRRKI QPPAADASSS SAPAAQQQQQ RSETRWHKTG  180
KTRPVVVAGR QRGCKKILVL YTNFGKHRRP EKTNWVMHQY HLGENEEERE GELVVSKIFY  240
QTQPRQCGAA AEPAAPASSD TVDGAADPAA EAVVAPPDVG DGGVFHGATG IDEFNFAQFR  300
SSFEEVGVGT SVQVPARADE EVHTGHLHLH QEHDLQQHRY TNHQEQQRMA AAAAAFQIST  360
PAEPITTMIS SSPMVHHGSV ILQQQEPYDH SASYRHHQQE DEQPHQSRNF DGRSTSGLEE  420
VIMGCTSRRS RRGEASGSGG NKESSDWQYP SFWPSDSQDH HG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697750.0EU969775.1 Zea mays clone 335447 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812519.10.0NAC domain-containing protein 75-like
SwissprotQ9M0F81e-107NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2S3HIL90.0A0A2S3HIL9_9POAL; Uncharacterized protein
STRINGSi006435m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.16e-98NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]