PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 116aa    MW: 12608.6 Da    PI: 9.8279
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.32.2e-1522502755
         G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                    AtPk+ lelm+vk+Ltl+hvkSHLQ+YR+
  Pahal.D01490.1 22 ATPKSALELMNVKDLTLAHVKSHLQMYRT 50
                    9***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.85E-62150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-132250IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-112250IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MHVHILGSET SLLCFLLHLL GATPKSALEL MNVKDLTLAH VKSHLQMYRT VKGTDRSCVA  60
GLGQQARGMA FLRRGAGEVD GFDVFNSSRS VNTTTTFNNY TNTARLAHCI SFLPK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616591e-49AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805465.12e-40uncharacterized protein LOC112884302
TrEMBLA0A2T7EIQ03e-49A0A2T7EIQ0_9POAL; Uncharacterized protein
STRINGPavir.J18135.1.p2e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.24e-16G2-like family protein