PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01322.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 429aa    MW: 47748.1 Da    PI: 4.8198
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01322.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.76e-33581971128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyW 83 
                     lp+G++F+P+d+el+++ L+k+ ++       ++++   ++ev +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+++     + +W
  Pahal.D01322.1  58 LPKGVKFDPSDQELLWHLLAKHGKSGIkphpfIDEFIPtVEEVdGICYTHPQKLP-GVKKNGSVSHFFHRTFKAYNTGNRKRRKINtddlaDVRW 151
                     799************998888755544556554444444888866**********.667778899******************74444666899* PP

             NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     ++tgk+k+vl+ +g++ g+kk++v+y  +++  k+ekt+Wvmh+y+l
  Pahal.D01322.1 152 HKTGKTKPVLV-DGKHLGCKKIMVLYisTEKGGKPEKTNWVMHQYNL 197
                     ***********.999***********7645666777*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3842216IPR003441NAC domain
PROSITE profilePS5100531.31758216IPR003441NAC domain
PfamPF023653.3E-1459197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MTGTTWIIDS QRFATKIKNA SGSSDPSKQK WMSNPSKECP KCSHVIDNSD VVHQWPGLPK  60
GVKFDPSDQE LLWHLLAKHG KSGIKPHPFI DEFIPTVEEV DGICYTHPQK LPGVKKNGSV  120
SHFFHRTFKA YNTGNRKRRK INTDDLADVR WHKTGKTKPV LVDGKHLGCK KIMVLYISTE  180
KGGKPEKTNW VMHQYNLGTG EDEKEGEYVV SKLFFQQQFK PGEKNAQELT TGDAVESVAA  240
ETDAVESMAA EADASDFTTL PSEGHFSTIQ EVVHNSEHNP YQVNENCEIN IQENASEGTV  300
VHPPSEKPEG GDNPQSQDPK LWESDSQFEL LDSQQLAEGL AMCDEFLLSQ SQTSCGGGDE  360
PRVIKPCLAV YAQLPTEDFK KDLEECQQLE PSDAVNIELD STAEFRLSQI DFSQDSFTTW  420
ASGKMIDD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965197.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-148NAC8_ARATH; NAC domain-containing protein 8
TrEMBLC5Z8F20.0C5Z8F2_SORBI; Putative uncharacterized protein Sb10g009670
STRINGSb10g009670.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-149NAC family protein