PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01034.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 365aa    MW: 38713.1 Da    PI: 8.9269
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01034.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17182215134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Pahal.D01034.1 182 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 215
                     *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.09E-12174216No hitNo description
SMARTSM004012.1E-16176227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14180215IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268180212IPR000679Zinc finger, GATA-type
CDDcd002027.99E-16181230No hitNo description
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
PfamPF003202.7E-15182215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSAIYMSQLS TALPLMEGDH HQDHHHHHHQ GHFQTFTLPK DPPILFPFVI SSSSSASDSS  60
LSYGSADHHL MFRQQHQAML EPQHMIGGSS SASVFATPFP TVESIRDDMI EPSSYDPYDM  120
GRLQAAGSLE AAGSWTPPAK MRITRKATAD PGAAKKPRRK AQGYEDMMSM GGQPNLGVIR  180
VCSDCNTTKT PLWRSGPCGP KSLCNACGIR QRKARRAMMA SGGGSGPVPA DGAKAATATP  240
RDAMAAPAHP KVKKEKRVDV DRSLPFKKRC KLVQDHAGAA GPPPAAAHKA VVQPAAEVAD  300
DAGLSSRDLV DNIGLLSWSR NPAPPSAAAS CSLFRASPGL PVQQDEITDA AMLLMTLSCG  360
LVRS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.10.0putative GATA transcription factor 22
TrEMBLA0A2S3HIY40.0A0A2S3HIY4_9POAL; Uncharacterized protein
STRINGPavir.Db01250.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-21GATA family protein