PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00049.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 1155aa    MW: 127887 Da    PI: 6.7007
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00049.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.5e-23143244199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  Pahal.D00049.1 143 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDSTWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDE 233
                     99*****************************954.4444.48************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  Pahal.D00049.1 234 KQQLLLGIRRA 244
                     8889****997 PP

2Auxin_resp118.36.4e-39269352183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Pahal.D00049.1 269 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 352
                     79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575127No hitNo description
SuperFamilySSF1019363.79E-43132272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-41135258IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-19142234No hitNo description
PfamPF023627.9E-21143244IPR003340B3 DNA binding domain
SMARTSM010191.2E-22143245IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026143245IPR003340B3 DNA binding domain
PfamPF065071.1E-33269352IPR010525Auxin response factor
PfamPF023094.0E-1010181106IPR033389AUX/IAA domain
PROSITE profilePS5174527.97510211105IPR000270PB1 domain
SuperFamilySSF542771.67E-710361100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1155 aa     Download sequence    Send to blast
MIKQQQQPAS SIGPQAAAVA AAAASGCEGE KKPPAINSEL WHACAGPLVS LPPAGSLVVY  60
FPQGHSEQVA ASMQKDVDGH VPSYPNLPSK LICLLHNVTL HADPETDEVY AQMTLQPVTS  120
YGKEALQLSE LALKQPRPQT EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA  180
QEIQARDLHD STWTFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV RDEKQQLLLG  240
IRRANRQPTN ISSSVLSSDS MHIGILAAAA HAAANNSPFT IFYNPRASPT EFVVPFAKYQ  300
KALYGNQISL GMRFRMMFET EELGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESAA  360
GERRNRVSIW EIEPVAAPFF ICPPPFFGSK RPRQLDDESS EMENLLKRAM PWLGEEICIK  420
DPQTQNTIMP GLSLVQWMNM NMQQNSSFAN TAMQSEYLRS LSNPSMQNLG AADLSRQLCL  480
QNQILQQNSI QFSSPKLTQQ MQPVHELSKA TLPLNQLGVS TKPQEQTQDP SNLQRQQQSM  540
NQLLPLSQSQ TNLVQAQVIV QNQVQQQQPQ SMTQNQQAST SQPQLLHHQQ QQQQQQQQQH  600
QQQKLLHQQQ QLLLQQQQLQ QQQQNQQQLN KMVAQVPNLA AQQLQLSDQQ LQLQLLQKLQ  660
QQQQSLLSQP AVTLAQLPLI QEQQKLILDM QQQLSNSQSL SQQQTMPQQS TKVPSQTPPP  720
PPPPPHMQQE PQQKLPQKHV GFPDTSHAAI PPATSVNAIS VSGSPLIANG ATHSVLTEEI  780
PSCSTSPSSA NGNHLVQPIL GRNQQCGMIN NEKVPQSTAP MSIPSSLDAV TAAPRSTKEL  840
PKLNSNVKQS VMASKLPNPG PVPQNLVNSA PPTDYLETAS SATSVWLSQT DGLLHQGFPM  900
SNFNQQHMFK DAPPETDIQG ADPCNNALFG INSDGQLGFP MGADGFLSNG IDTSKYQNHI  960
STDIDGNYRI PKDGQQEISS SMVSQSFGAS DMAFNSFDSA MNDGGFLNKT SWLPAPPLKR  1020
RTFTKVYKRG AVGRSIDISQ YSGYDELKHA LARMFSIEGQ LEERQRIGWK LVYKDHEDDI  1080
LLLGDDPWEE FVNCVRCIRI LSPQEVQQMS LDGDLGNNIL PNQACSSSDG GNAWRARCDQ  1140
NSGNPSNGSY DQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682937345388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810781.10.0auxin response factor 19-like isoform X1
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A2S3HGJ60.0A0A2S3HGJ6_9POAL; Auxin response factor
STRINGPavir.J00164.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]