PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04849.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 310aa    MW: 35336.3 Da    PI: 7.7799
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04849.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.93.5e-48291612128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      pG+rFhPtd+elv +yL++kve+k +++ ++ikevdiyk++PwdLp+      + ++++++wyfF+ r +ky+++ r+nr+t sg+Wkatg dk
  Pahal.C04849.1  29 FPGYRFHPTDQELVGFYLARKVEKKGISI-DIIKEVDIYKHDPWDLPNearhvvQGAGDKEDWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDK 122
                     69***************************.99**************9646665433336679********************************* PP

             NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++   +ge  glkk+Lv+y+g+a +g+ktdW+mhe+rl
  Pahal.C04849.1 123 PIHGGaGGECLGLKKSLVYYRGSAGRGTKTDWMMHEFRL 161
                     ***9868888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5428184IPR003441NAC domain
PROSITE profilePS5100552.49128184IPR003441NAC domain
PfamPF023653.2E-2430161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEEEKPSERV KEGGGGVEVG TEDDDDLVFP GYRFHPTDQE LVGFYLARKV EKKGISIDII  60
KEVDIYKHDP WDLPNEARHV VQGAGDKEDW YFFCLRGRKY RNSIRPNRVT GSGFWKATGI  120
DKPIHGGAGG ECLGLKKSLV YYRGSAGRGT KTDWMMHEFR LPSSTASAEL QDAEIWTICR  180
IFKRNMSYTY SRRRQQQQKR DHGSKRSHQQ QQQQLQYYYD YRYHHQHGAS MTRSSFDYSS  240
EASEAYPTDH HQPFLLHGFH GASSAKTTAT ASSGLMGAPL LPSMSVWSEL TTFRDSGSTW  300
DELGRIMEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-47161871168NO APICAL MERISTEM PROTEIN
1ut4_B2e-47161871168NO APICAL MERISTEM PROTEIN
1ut7_A2e-47161871168NO APICAL MERISTEM PROTEIN
1ut7_B2e-47161871168NO APICAL MERISTEM PROTEIN
4dul_A2e-47161871168NAC domain-containing protein 19
4dul_B2e-47161871168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809001.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-77NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2S3HFN10.0A0A2S3HFN1_9POAL; Uncharacterized protein
STRINGPavir.Ca02638.1.p1e-179(Panicum virgatum)
STRINGPavir.Cb00167.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-77NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]