PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04716.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LSD
Protein Properties Length: 178aa    MW: 18459.6 Da    PI: 8.4376
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04716.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.6e-13731125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr lL YPrGApsV+Ca+C++V
  Pahal.C04716.2  7 CHGCRSLLLYPRGAPSVCCAVCHAV 31
                    ************************9 PP

2zf-LSD144.23.1e-144670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y+r+A+ VRC++CdtV
  Pahal.C04716.2 46 CGGCQTLLMYTRNATTVRCSCCDTV 70
                    ************************9 PP

3zf-LSD150.82.6e-1684108125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C+t+L+YP+GApsV+Ca+C+++
  Pahal.C04716.2  84 CGQCQTVLMYPYGAPSVKCAICNFI 108
                     ***********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.5E-13434IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.9E-134473IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.9E-1281110IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-1484108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQSQIVCHGC RSLLLYPRGA PSVCCAVCHA VTTVPPPGME MARLICGGCQ TLLMYTRNAT  60
TVRCSCCDTV NLVRPVSSIA HVNCGQCQTV LMYPYGAPSV KCAICNFITN VGGVPTVRPL  120
PPALPASSGN SYNIPSTSAP TSQSQNVTVV VENPMTVDDK GKLVSNVVVG VTTGGKK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3146990.0KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963155.11e-116PREDICTED: protein LOL2-like isoform X2
SwissprotQ2QMB31e-101LOL2_ORYSJ; Protein LOL2
TrEMBLH9B8F61e-117H9B8F6_MISSI; Putative zinc finger LOL2
STRINGSb08g021100.11e-115(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-47lsd one like 1