PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04702.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 443aa    MW: 46548.2 Da    PI: 5.8321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04702.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.42.3e-17261307455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++ +L+el+P++      K +Ka++L +A+eY+ksLq
  Pahal.C04702.1 261 VHNLSERRRRDRINEKMKTLQELIPHC-----NKTDKASMLDEAIEYLKSLQ 307
                     6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.36E-19254311No hitNo description
Gene3DG3DSA:4.10.280.104.0E-20254311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-20255312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-15261307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-19263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MNQYVPDWSS SMGDAFATLN GGDDDGLMEL LWCNGHVVMQ SQAPRKPTRP EKVAAAAAAA  60
AAQDDEAAAW FQYPAEDALE RDLFTELFGE AQAADAGSGR ACKEEAECGG EAAARRSGLM  120
PPPWEKECPG ELGDVAAGGE CTATATEAGE SSMLTVGSSF CGSNHVQTPR ARATCGGAAA  180
PGAAGKAGGS ARDAATVTSS SMRPRSCTTK AGQPSATAHR SGKRRPSDAT ETEDAEFESA  240
DATCEPAQKL TTAKRRRAAE VHNLSERRRR DRINEKMKTL QELIPHCNKT DKASMLDEAI  300
EYLKSLQLQL QMGGGMAAAA APVMFPAGVH QYMQRMVAPS HVASMPRMPF MAPPAVQSPP  360
GADPYARYLA VDHLQPPPPP PAPMHYLQGM GFYQQQQSSA PPPPAVPAGS LPAATSRTSP  420
PDGPLHKKYE SCGMPEIQGI TS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254269RRRAAEVHNLSERRRR
2265270ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558762e-69BT055876.1 Zea mays full-length cDNA clone ZM_BFc0002C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963136.10.0PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_004963135.10.0PREDICTED: transcription factor PIF4-like isoform X1
TrEMBLK3Z6M70.0K3Z6M7_SETIT; Uncharacterized protein
STRINGSi022196m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-28phytochrome interacting factor 3