PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04387.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 180aa    MW: 18671.6 Da    PI: 11.5614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04387.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-053578146
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLek 46
                    rrr   e+ rrRR+r+   ++eL  +lP+ +   +s+  +   i+  
  Pahal.C04387.1 35 RRRRDREVQRRRRARVSALYAELGAMLPSlP---TSRPATQEKIVDA 78
                    6777899**********************55...6666666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.47E-733104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.5913486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-43595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MATAAAAGGL PLELSLDTVA APAAATTAES AVERRRRRDR EVQRRRRARV SALYAELGAM  60
LPSLPTSRPA TQEKIVDAAK ARVEALEDTA AALQACRGAP RPGREVALSC GTVTVSARLP  120
SPKPAGALRR VVEAFERRGA RVLMATMARH GGAVVVTVTA AAAALEVVEM IRADIASIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238ERRRRRD
23346RRRRRDREVQRRRR
33746RDREVQRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443294.18e-33hypothetical protein SORBIDRAFT_08g017040
TrEMBLK3ZEV72e-40K3ZEV7_SETIT; Uncharacterized protein
STRINGSi025105m7e-40(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931