PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04264.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 373aa    MW: 40162 Da    PI: 6.1913
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04264.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.65e-3583182297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                     lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg  +sf+++h+q ife++
  Pahal.C04264.1  83 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFSFRSPHEQAIFEIA 177
                     79************************99877778***************************************8999****************** PP

          DUF573  93 kkiWg 97 
                     + iW+
  Pahal.C04264.1 178 RNIWR 182
                     ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.3E-3184181IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MHPTGDDPSA AAGISFPDVD GGGGGGGDSE DADFAGGHLL DPTDPSLPNP TTSSATGLPH  60
AVPTGGSGGG PVTSGNGGER RPLFQRLWTE EDEIVILRGF AEFTAARGTA FASHQYDTDP  120
FYEDMRRRLQ LDFSKSQLVE KLRRLKRKYR NCVSRLRESG ATFSFRSPHE QAIFEIARNI  180
WRPTNKHGRD PSADSDDEDA AANTSPNGEV KSPSSGRQRR RRRATDFAAA AGTAPATSMV  240
QPSQPVQLSV SVPVKMEDSL PALPQNPMPV TVTMDGSEPL RLPVMSPQSG VSDAEKSCLT  300
PLLKEMIHAV INVGTNPCGA KLPEPPLGLP MEGEKWRKQR ILELEVYLKR IELLQDQAKA  360
TLEELKSSTR GT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699720.0EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds.
GenBankBT0416520.0BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds.
GenBankKJ7267970.0KJ726797.1 Zea mays clone pUT2289 GeBP transcription factor (GBP12) mRNA, partial cds.
GenBankJX4284550.0JX428455.1 Zea mays subsp. mays clone pUT3049 GBP12 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958448.10.0PREDICTED: uncharacterized protein LOC101786126
TrEMBLK3ZUF80.0K3ZUF8_SETIT; Uncharacterized protein
STRINGSi030239m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-35DNA-binding storekeeper protein-related transcriptional regulator