PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03928.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 372aa    MW: 38733.6 Da    PI: 4.8654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03928.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.4e-12186228754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Pahal.C03928.1 186 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 228
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16182246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9185228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-16186242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-13186232No hitNo description
CDDcd048732.81E-5300341No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDDSAPGKLD EITGGGGAPG DWSYLTSDGM ASGSFPLFPF PRDALSTPPS AASLLLSMDP  60
AALFDIRGAF PPPSSAAGGG GSELPAFHDF TSNNPFDDAG QFLAAPPPAP AEQHQGHKGG  120
FLAPPPAPAF GIDWDDDDEM EHSVDASSMA ISASMENAAG ASTGGGGGGG GSGRGKKKGM  180
PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNEIE  240
SAPSSSLVGP TSASFHPSTP TLQTFPGHVK EELCPAAFPS PNGQQATVEV RMREGHAVNI  300
HMFCARRPGI LLSTMTALDG LGLDIEQAVI SCFNGFAMDV FRAEQCGDGP GLVPDEIKAV  360
LLHTAGLPNA M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175193KKKGMPAKNLMAERRRRKK
2187194ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971151.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-102ICE1_ARATH; Transcription factor ICE1
TrEMBLK3XJ010.0K3XJ01_SETIT; Uncharacterized protein
STRINGSi001874m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-103bHLH family protein