PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 504aa    MW: 51950.9 Da    PI: 6.8544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01291.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.8e-16320366455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Pahal.C01291.1 320 VHNLSERRRRDRINQKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 366
                     5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.21E-17312370No hitNo description
Gene3DG3DSA:4.10.280.105.0E-20313374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-20313391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.739316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-14320366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-17322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MTGPGDELAE LLWDNGPALR RAPPPFQPFT CSAAGSSRAH ELKRHAAGGM VPVPLGIHDG  60
GGLPGLHAHG GGDDDAVPWL HCPVVVDDGD ADTAPLPPEY CAGLLSEYQG LPAAPPASHG  120
AAVPASRAAP PEAAAKQAPP PGSASGGGEG VMNFTFFSRP LQRPQASAAA AASIPVESTV  180
VQAATNRLRA TPLFSEQRMA WLQPPNGPRA TVAGAAPAPA PAPAAQAPLP TDHHLHGEAA  240
TVTQRRLQPE ARAPGAAAAT AVVTTSSVCS GNGDRSQHPK RSSHQVADCS VSPDEDLDDE  300
GGAIRRSASR SNKRSRTAEV HNLSERRRRD RINQKMRALQ ELIPNCNKID KASMLEEAIE  360
YLKTLQLQVQ MMSMGTGLCV PPMLLPAMQV PVPHPMAHFP HLGMGLGFGM GAAAAFDMAR  420
VAGAHFPCPP MAMPPGPMFG VPGQAMPSPA AAAFAHMAAS GTAPLEHIEA AAAAPAREEA  480
EPPPAPVATL TQGDQKLQHP KPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324329ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805180.10.0transcription factor APG-like
SwissprotQ0JNI95e-93PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A2S3H8910.0A0A2S3H891_9POAL; Uncharacterized protein
STRINGPavir.Ca01237.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-32phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]