PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04251.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 226aa    MW: 24576.5 Da    PI: 4.7134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04251.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-1357103455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ e+ErrRR r+Ns +  Lr ++P+      +K+sK ++L  A+++Ik+Lq
  Pahal.B04251.1  57 KNLEAERRRRGRLNSNILALRAVVPNI-----TKMSKESTLSDAIDHIKKLQ 103
                     56799*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-1753119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-1253106No hitNo description
PROSITE profilePS5088815.21853102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1455114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1056103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-1459108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MPRRQRARSS EELKAEDFVD SVLNFGGAGG GGEGEDEEEG EAGGGDGQPA ATEYKSKNLE  60
AERRRRGRLN SNILALRAVV PNITKMSKES TLSDAIDHIK KLQNQVLELQ QQLADSSGEA  120
WEKQGSASCS ESFAATENMP YQGQVELVPL GPYKYHLKIF CKKAGIFTKV LEALCSYNAQ  180
VTSLSTITFY GYAESVFCIE VKGEQDVVMA ELRSLLSSIV EVPNN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460833.11e-134hypothetical protein SORBIDRAFT_02g035870
SwissprotB9FXT32e-91UDT1_ORYSJ; Transcription factor UDT1
TrEMBLK4A1H41e-136K4A1H4_SETIT; Uncharacterized protein
STRINGSi032717m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119823036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-17bHLH family protein