PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04212.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 256aa    MW: 27594.6 Da    PI: 6.5345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04212.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.9e-1194141454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  Pahal.B04212.1  94 TKACREKIRRDKLNERFLELGAILEPG---KTPKMDKSAILNDAIRVVGEL 141
                     7789**********************9...9**************987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1381157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.59590141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-893144No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1393155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-894141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-996147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1702.7E-4156188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASPEGTTWV FDCPLMDDLA VAADFAAAPA GGFFWSAAAP MQPLGVQAPM QAVAAAPAPS  60
PCSVEISGSV DSDQGKEQTT NKRPRSESTA QPSTKACREK IRRDKLNERF LELGAILEPG  120
KTPKMDKSAI LNDAIRVVGE LRSEAKKLKD SNESLQEKIK ELKAEKNELR DEKQRLKAEK  180
ESLEQQIKFL NSRPSLVPHP PVMPASAFAA PQGPAAACHK LMMPVIGYPG FPMWQFMPPS  240
DVDTSNDPKS CPPVA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957935.11e-152PREDICTED: transcription factor ILR3 isoform X1
SwissprotQ9FH378e-78ILR3_ARATH; Transcription factor ILR3
TrEMBLK3ZW951e-152K3ZW95_SETIT; Uncharacterized protein
STRINGSi030877m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-69bHLH family protein