PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03545.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 325aa    MW: 33160 Da    PI: 4.6586
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03545.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.75.2e-3168155789
             TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....k 89 
                     r  ++hTkv+gR+RR+R+ a+ca r+  L++eLG+++d++t+ WLlqq++pai+++tgt++ +a ++  ++ +    ++ ++     +
  Pahal.B03545.1  68 RYRDRHTKVEGRGRRIRMAAPCATRISRLTRELGHKSDGETVRWLLQQSEPAIIAATGTGTVPAIAVAGSDGVLRLPTEPAPaaadvE 155
                     678********************************************************88888555333333333322222212110 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136923.47869123IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2470132IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEPRAPGRGG EDAEPLYLAA EAVGNGTAAV DAMGSVEAGG SGLPKPEPVP VEFLGGGLQL  60
ANPRPAPRYR DRHTKVEGRG RRIRMAAPCA TRISRLTREL GHKSDGETVR WLLQQSEPAI  120
IAATGTGTVP AIAVAGSDGV LRLPTEPAPA AADVEQQEPA PKRRRKLQPT RAAAGASAPP  180
PAAYYPVVAD PLLQANGGGA ISMSSGLAPA SAPGVPAGAI PFLALPATGP GATGDGKQMI  240
PPAAVWMVPQ QAGAAGAANQ PTHFWAFPTN PELFNAANFQ QQAVYDAEQL AGNGEPQDQQ  300
PGGHQLGEGE DEEEIAVTDS SSEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166PKRRRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803340.10.0transcription factor PCF2-like
SwissprotA2YXQ18e-85PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH68e-85PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A2S3H1F50.0A0A2S3H1F5_9POAL; Uncharacterized protein
STRINGPavir.Ba01284.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.24e-36TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]