PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03522.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 243aa    MW: 25496.7 Da    PI: 6.6245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03522.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-1185131354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e Er+RR+++N +f  Lr  +P+       +++Ka+ L  A +YI +L
  Pahal.B03522.1  85 ASHVESERQRREKLNCRFCDLRAAVPTV-----SRMDKASLLADAAQYIAEL 131
                     6899***********************6.....49**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.01582131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1585144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-985131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1586143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-1086136No hitNo description
SMARTSM003532.3E-1088137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDEHLSPSSC SRPAPFSFSE ASCTILELPS FEVPEQWLLA DVVAAGENEN DDIAAAPSPS  60
APAPAPAKRR GRKPGPRPGA GAAAASHVES ERQRREKLNC RFCDLRAAVP TVSRMDKASL  120
LADAAQYIAE LHARVAQLEA DARHHAAVAR WEPASAGGDA AAAVGGELYV RKVGRDAAVV  180
RVTSGARHAR AWLLGALRSL ELQVQHACVS RARGVPTQDV LVDVPAGATA LQDDDDLRAA  240
LL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460537.18e-90hypothetical protein SORBIDRAFT_02g030110
TrEMBLC5X6069e-90C5X606_SORBI; Putative uncharacterized protein Sb02g030110
STRINGSb02g030110.13e-89(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.17e-22bHLH family protein