PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02754.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 306aa    MW: 33099.1 Da    PI: 6.2342
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02754.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.17.8e-4581431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF+Ptdeel+++yL++k+++  +    +++evd+y+++PwdL  ++ ++   +yfF++r+ k ++g r+nrat++gyWk+tgkdk v+++
  Pahal.B02754.1   8 LPPGFRFRPTDEELLTHYLAPKAADAGFAP-AAVREVDLYRSQPWDLLPAAGGGGGCCYFFCRRSVKFPSGLRTNRATRAGYWKSTGKDKVVTRQ 101
                     79*************************888.78**************53555666688***********************************99 PP

             NAM  96 .........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +ge  glkktLvfy+grap+gekt+Wvmheyrl
  Pahal.B02754.1 102 hgggsidsgRGEPLGLKKTLVFYRGRAPTGEKTNWVMHEYRL 143
                     8888887777777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-537170IPR003441NAC domain
PROSITE profilePS5100550.8528170IPR003441NAC domain
PfamPF023654.4E-289143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGGGDGRLPP GFRFRPTDEE LLTHYLAPKA ADAGFAPAAV REVDLYRSQP WDLLPAAGGG  60
GGCCYFFCRR SVKFPSGLRT NRATRAGYWK STGKDKVVTR QHGGGSIDSG RGEPLGLKKT  120
LVFYRGRAPT GEKTNWVMHE YRLVQGHGYT SPMLATGSQS EWVICRMFMR KAPGEKSLLE  180
EETVPHSPLN NGHLQPSFDG CNGGKTTTAV GEASNPEHAN CFSDALAIAP ADRHHETACQ  240
GALQLNREAE LLMNCSASDY ASAAAPASEL QQQATLLLDE LSSDCFDDLL PQLLDYEGLP  300
FLQDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-44817617171NO APICAL MERISTEM PROTEIN
1ut4_B5e-44817617171NO APICAL MERISTEM PROTEIN
1ut7_A5e-44817617171NO APICAL MERISTEM PROTEIN
1ut7_B5e-44817617171NO APICAL MERISTEM PROTEIN
3swm_A6e-44817620174NAC domain-containing protein 19
3swm_B6e-44817620174NAC domain-containing protein 19
3swm_C6e-44817620174NAC domain-containing protein 19
3swm_D6e-44817620174NAC domain-containing protein 19
3swp_A6e-44817620174NAC domain-containing protein 19
3swp_B6e-44817620174NAC domain-containing protein 19
3swp_C6e-44817620174NAC domain-containing protein 19
3swp_D6e-44817620174NAC domain-containing protein 19
4dul_A5e-44817617171NAC domain-containing protein 19
4dul_B5e-44817617171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3' (PubMed:23340744). Promotes lateral root development (PubMed:16359384). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:9351240, PubMed:15295076, PubMed:20113437, PubMed:21303842). Regulates also genes during seed germination (PubMed:20113437). Regulates positively aging-induced cell death (PubMed:19229035). Involved in age-related resistance (ARR) against Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis (PubMed:19694953). Antagonizes GLK1 and GLK2 transcriptional activity, shifting the balance from chloroplast maintenance towards deterioration during leaf senescence (PubMed:23459204). Promotes the expression of senescence-associated genes, including ENDO1/BFN1, SWEET15/SAG29 and SINA1/At3g13672, during senescence onset (PubMed:23340744). {ECO:0000269|PubMed:15295076, ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:19229035, ECO:0000269|PubMed:19694953, ECO:0000269|PubMed:20113437, ECO:0000269|PubMed:21303842, ECO:0000269|PubMed:23340744, ECO:0000269|PubMed:23459204, ECO:0000269|PubMed:9351240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: High levels during senescence (e.g. age-, salt- and dark-related) (PubMed:19229035, PubMed:20113437, PubMed:21511905, PubMed:22930749). By salt stress in an ethylene- and auxin-dependent manner (PubMed:16359384, PubMed:19608714, PubMed:20113437, PubMed:20404534). Induced by H(2)O(2) (PubMed:20404534). Accumulates in response to abscisic acid (ABA), ethylene (ACC) and auxin (NAA) (PubMed:16359384, PubMed:19608714). Repressed by high auxin (IAA) levels (PubMed:21511905). Age-related resistance (ARR)-associated accumulation (PubMed:19694953). Repressed by miR164 (PubMed:19229035). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:19229035, ECO:0000269|PubMed:19608714, ECO:0000269|PubMed:19694953, ECO:0000269|PubMed:20113437, ECO:0000269|PubMed:20404534, ECO:0000269|PubMed:21511905, ECO:0000269|PubMed:22930749}.
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801567.10.0NAC domain-containing protein 92-like
SwissprotQ9FKA03e-58NAC92_ARATH; NAC domain-containing protein 92
SwissprotQ9FLJ21e-57NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2T7ES830.0A0A2T7ES83_9POAL; Uncharacterized protein
TrEMBLA0A2T8KQF50.0A0A2T8KQF5_9POAL; Uncharacterized protein
STRINGPavir.Ba02230.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39610.15e-54NAC domain containing protein 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Khan M,Rozhon W,Poppenberger B
    The role of hormones in the aging of plants - a mini-review.
    Gerontology, 2014. 60(1): p. 49-55
    [PMID:24135638]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Bohner A,Kojima S,Hajirezaei M,Melzer M,von Wirén N
    Urea retranslocation from senescing Arabidopsis leaves is promoted by DUR3-mediated urea retrieval from leaf apoplast.
    Plant J., 2015. 81(3): p. 377-87
    [PMID:25440717]
  6. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  7. Kim H, et al.
    Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(33): p. 8448-8453
    [PMID:30065116]