PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00786.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 366aa    MW: 38979.9 Da    PI: 5.7733
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00786.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573103.12.3e-3257156297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                     lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+qlveKirrLK+K++++v++ +  g  ++f+++h+q ife++
  Pahal.B00786.1  57 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLNTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAIFEIA 151
                     79*************************8867778***************************************88899***************** PP

          DUF573  93 kkiWg 97 
                     + iW+
  Pahal.B00786.1 152 RTIWR 156
                     ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.6E-3058155IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SASAAPPAAG AGERRPLFQR  60
LWTDEDEIVI LRAFAEFTAQ RGTSFASHQY DTTPFYEDMR RRLNTGFTKN QLVEKIRRLK  120
RKYRNCVERL RVAGAGFTFR SPHEQAIFEI ARTIWRPDSD KHGRDSDDEG AANAHDGPLA  180
LDANGESTKS PTSRPRRGGR RRRTGDFPAD AAAETLALPP APMPVMAEDA LPSFPAAGMP  240
AMDAGVGMGG ISMDPAAGLP AAMSAAAAAS AVTGGGTAEN PILAALFKEM VRAMLSIGGG  300
VTAAPLGLEP PPAIAGMPME GEKWRQQRIR ELEVYLRRID LLQDQARAAL EELRSAPQAR  360
GGMNT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721160.0EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds.
GenBankBT0645990.0BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465220.11e-180hypothetical protein SORBIDRAFT_01g034370
TrEMBLC5WYP91e-180C5WYP9_SORBI; Putative uncharacterized protein Sb01g034370
STRINGSb01g034370.11e-180(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.27e-32DNA-binding storekeeper protein-related transcriptional regulator