PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00666.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 141aa    MW: 16037.9 Da    PI: 10.5102
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00666.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-15741343999
                     EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         g++W+ ++ + +++++ +l +GW +F+++ngL++gD+++F l++  +e +++v+++++
  Pahal.B00666.1  74 LECMGKTWKTQMVIHNGRRW-FLNGGWAKFARDNGLRVGDICLFDLKKYpRELTMNVHIISR 134
                     44479*******77777766.6999**********************999********9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-2129134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1830133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-1635133No hitNo description
SMARTSM010191.6E-437135IPR003340B3 DNA binding domain
PfamPF023621.8E-1359134IPR003340B3 DNA binding domain
PROSITE profilePS5086311.95678135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
LWSPPLYIVP CRNYLSKSQK KIVEERVRAI QSKVPICVAV MKNNNVGDAQ KWMLELGVRY  60
AAVHLPASGQ AVALECMGKT WKTQMVIHNG RRWFLNGGWA KFARDNGLRV GDICLFDLKK  120
YPRELTMNVH IISREQLSLK *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.11e-90B3 domain-containing protein Os03g0619800-like isoform X3
SwissprotQ6AV227e-40Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A2S3IK443e-91A0A2S3IK44_9POAL; Uncharacterized protein
TrEMBLA0A2S3IK604e-91A0A2S3IK60_9POAL; Uncharacterized protein
STRINGPavir.Ib02116.1.p2e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-06B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]