PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00264.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 347aa    MW: 38682.1 Da    PI: 6.1384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00264.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.39e-51471781128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     + pGfrFhPtdeelv++yL++kv+g++l++ e+ik++diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s
  Pahal.B00264.1  47 MLPGFRFHPTDEELVTFYLRRKVAGRRLSI-EIIKDFDIYKHDPWDLPkSSTISGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYS 140
                     579***************************.89***************445556899************************************** PP

             NAM  95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +     g  +glkk+Lvfy+g+a kg+kt+W+mhe+rl
  Pahal.B00264.1 141 AaagrAGDPIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 178
                     987777777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5546205IPR003441NAC domain
PROSITE profilePS5100555.78647205IPR003441NAC domain
PfamPF023653.4E-2549178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MPTRSSSAMV QEQHHMAKER SLEMKGSDHG EGAEEVVLVG DEEEEDMLPG FRFHPTDEEL  60
VTFYLRRKVA GRRLSIEIIK DFDIYKHDPW DLPKSSTISG EKEWYFFCLR GRKYRNSIRP  120
NRVTGSGFWK ATGIDRPIYS AAAGRAGDPI GLKKSLVFYR GSAGKGTKTE WMMHEFRLPP  180
RPESPHTSPS EQEAEVWTIC RIFRRSISYK KHPQQQQVAG KVSTAGVAQP DYSSSITGSL  240
ESDTGDEYTN GSLPPPQAPA INSVNDAGYG YSSQQFQGQW NSSALHAAAT APLPSPTTMA  300
AFHHDVLSSS PAAPDDMYYK DGSSWDDIGR MMMELTDDMF CDSRYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-494921119171NO APICAL MERISTEM PROTEIN
1ut4_B4e-494921119171NO APICAL MERISTEM PROTEIN
1ut7_A4e-494921119171NO APICAL MERISTEM PROTEIN
1ut7_B4e-494921119171NO APICAL MERISTEM PROTEIN
4dul_A4e-494921119171NAC domain-containing protein 19
4dul_B4e-494921119171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803594.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK553e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2S3GVN70.0A0A2S3GVN7_9POAL; Uncharacterized protein
STRINGSi030477m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-79NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]