PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00159.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 398aa    MW: 42183.5 Da    PI: 10.4396
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00159.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.35.4e-31240295156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r+ W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pahal.B00159.1 240 KARRTWSPELHRQFVAALSQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 295
                     68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.649237297IPR017930Myb domain
SuperFamilySSF466892.33E-16238298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-28238298IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-25240295IPR006447Myb domain, plants
PfamPF002499.0E-7242293IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGLDVLEIGM GSDLSLDLRY FASKAVRQAR DAPASDVDAC IRRLEEERGK IEMFRRELPL  60
CARLLAEVID VMKAEAGTKT KSDRKAAVAA EEDGAAGDKS KWMSTAQLWT GDSGREDAES  120
EKQDKGRSSP EAKSRGGGGA FLPFKAVGSG APAFAPLCLR VDDKAADAGT PDLSLLSPPA  180
IKSSPAAAGA AEENRRQVVG FAQAAARAVA MAPSGPSLTL QSQPQQTAQQ QQQQQQAARK  240
ARRTWSPELH RQFVAALSQL GGAQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHNRRAP  300
GSAVVSQPIV LVGRFGSPRS KAAHSLDPPR APSTSQHRAS PSHRRPPSAV RRKMACPRAV  360
AGNDEEAAAS SAFRQTGFDG SRATVMSPIT ASGGSHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-14240293154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-14240293154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-14240293154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-14240293154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804519.10.0transcription factor NIGTH1-like
TrEMBLA0A2T8KMG40.0A0A2T8KMG4_9POAL; Uncharacterized protein
STRINGPavir.Ba02240.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-30G2-like family protein