PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03583.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 217aa    MW: 23055.7 Da    PI: 4.7563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03583.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-161363155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++kGVr +k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  Pahal.A03583.1 13 KKFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAFVCLRG 63
                    59*****999.**********933...5*********************999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.22E-251376No hitNo description
PROSITE profilePS5103221.181474IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-171476IPR016177DNA-binding domain
PfamPF008477.4E-91462IPR001471AP2/ERF domain
SMARTSM003808.1E-291480IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-261476IPR001471AP2/ERF domain
PRINTSPR003672.6E-81526IPR001471AP2/ERF domain
PRINTSPR003672.6E-83753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSSSSPEMEG SSKKFKGVRK RKWGKWVSEI RLPNSRERIW LGSYDAPEKA ARAFDAAFVC  60
LRGPGAAGAD LNFPDSPPPC RAGGCSSDPQ EVQAAALSHA NRAAVTAQQA AAALMDVDDG  120
SVLPWGSVAH DMAGVLGTGS ADEVVAPVRA DGSIDWRPFM AHPPPLFSPT GWGSNAYDFL  180
QELPPPGAAD EDMEDSIHGA TASLWSFDLR DSYFRY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794487.11e-156ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC28e-36ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2S3GTS81e-155A0A2S3GTS8_9POAL; Uncharacterized protein
STRINGPavir.Aa00296.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]