PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01828.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 435aa    MW: 47157.8 Da    PI: 4.3359
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01828.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.75.7e-2091461128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikev...diykvePwdLp.kkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgk 88 
                     lppG+rF+Pt +elv +yL +++ g++  +  + i+++       ++Pw+L  ++ ++++   yfF +++++     g r+ r+   ++Wk  g+
  Pahal.A01828.1   9 LPPGVRFDPTGDELVEFYLLPRALGRPPAVPGIiIEDAaaaTTSASHPWKLLtRHRRTDDGAAYFFERASSSDDAkvGARQYRS-CGSRWKWVGQ 102
                     79*************************7776554776632246677*****833444455578***998877654237888886.4589*****9 PP

             NAM  89 dkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   ++     ++++ + k  L + +gr+++g +t Wv+hey++
  Pahal.A01828.1 103 RRWPDEAlpprgGEQVSWRKCALNLQEGRRKSG-STGWVLHEYTV 146
                     776655566775555566677899999999997.9********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-244161IPR003441NAC domain
PROSITE profilePS5100525.5749163IPR003441NAC domain
PfamPF023653.9E-1210145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSAAKALGLP PGVRFDPTGD ELVEFYLLPR ALGRPPAVPG IIIEDAAAAT TSASHPWKLL  60
TRHRRTDDGA AYFFERASSS DDAKVGARQY RSCGSRWKWV GQRRWPDEAL PPRGGEQVSW  120
RKCALNLQEG RRKSGSTGWV LHEYTVASPQ CPFPVKLCHV AFTGYGYKRQ RVPDGGEGEA  180
QELEPQAAPP PHKRAAATAS SVITTATLDQ EDLGEVRHRA QDQEQQFLDY GTSSVGDFCG  240
SDAGFSQESS VLDPWCPDAG PSQQEPFALD QELAQNQECF TNQSQEQFVN HEGSSIEAYC  300
ALLLAPDLRS SQEPPAGQSL TEEQQLQLQL AQLLGGINSP RGPPTAPAGG EAAYHEEHIQ  360
TTSDLPLPTD QESCTTEKPD GNMGQDDFFE GWGDLDSFCD TTGVQTDDDE MAAGSPERLP  420
AMVVEVQPVA GAKSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T8KVE20.0A0A2T8KVE2_9POAL; Uncharacterized protein
STRINGSi019916m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.14e-11NAC domain containing protein 50