PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01414.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 354aa    MW: 39074.4 Da    PI: 7.2852
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01414.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-52101401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+   ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  Pahal.A01414.1  10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI 103
                     69****************************.9***************943455444445************************************ PP

             NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +    g+++gl+ktLvfy+grap+g+ktdW+mheyrl
  Pahal.A01414.1 104 FLGnAGRKIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140
                     99767899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-587162IPR003441NAC domain
PROSITE profilePS5100558.93710162IPR003441NAC domain
PfamPF023651.6E-2711140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MYPSCSPLTV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNAGR KIGLRKTLVF  120
YTGRAPHGKK TDWIMHEYRL DDDNAEVPIT EEGWVVCRVF MKKSIQRGFD QQGVVAAGDD  180
DELQSFHHSP GGATPPVDQK LGLHQFMHGC FPAFDPSMHL PHLTSAEAAP LGAPAFMSGT  240
PPAAAVNPLD MGSAPHNLAK LTASCRTAGD MLLNGADRFG AAGADWSILD KLLVSHQNLD  300
QLFHGKLGGT GSAVGVPHHY HQQQQLMGMS ASTLQRLPLH YLGCDAADLK FSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48816415167NO APICAL MERISTEM PROTEIN
1ut4_B2e-48816415167NO APICAL MERISTEM PROTEIN
1ut7_A2e-48816415167NO APICAL MERISTEM PROTEIN
1ut7_B2e-48816415167NO APICAL MERISTEM PROTEIN
3swm_A2e-48816418170NAC domain-containing protein 19
3swm_B2e-48816418170NAC domain-containing protein 19
3swm_C2e-48816418170NAC domain-containing protein 19
3swm_D2e-48816418170NAC domain-containing protein 19
3swp_A2e-48816418170NAC domain-containing protein 19
3swp_B2e-48816418170NAC domain-containing protein 19
3swp_C2e-48816418170NAC domain-containing protein 19
3swp_D2e-48816418170NAC domain-containing protein 19
4dul_A2e-48816415167NAC domain-containing protein 19
4dul_B2e-48816415167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9530451e-169EU953045.1 Zea mays clone 1377565 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827212.10.0NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-105NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A2S3GN970.0A0A2S3GN97_9POAL; Uncharacterized protein
STRINGPavir.Ab01037.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-92NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]