PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01298.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 383aa    MW: 40938.1 Da    PI: 9.8355
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01298.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.83.3e-20298360163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elk+++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++++l+se+
  Pahal.A01298.1 298 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCDSLTSEN 360
                     89***********************************************************98 PP

2bZIP_120.78.9e-073433732555
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  25 kaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     k+e+++L+ek+++L++eN++L ++l+ l++e
  Pahal.A01298.1 343 KEELKQLQEKCDSLTSENTSLHEKLKALEDE 373
                     799*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.8E-291101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.3E-19140266No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-15293356No hitNo description
PfamPF001705.1E-18298360IPR004827Basic-leucine zipper domain
SMARTSM003388.6E-20298362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.541300363IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-9301357No hitNo description
CDDcd147025.12E-21303354No hitNo description
PROSITE patternPS000360305320IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGKGDVATRS KSQKSSAIQN EQSTPTNPPT AYPDWSQFQA YYNAAGTAPV TPPAFFHSSV  60
APSPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQAPM PPGSHPYSPY PMQSPNGTVQ  120
TPTSGAGRTE TDKSSKNKRK TPLKRSKGSL GSLDVVAAKN NKSPAKPSAS SSNEGSSQSE  180
SGSGSSSEGS SANSKSDSRV KDSSERGQGN DSRSKGTQSS AVEPTQPSSG PAVLNPMMPF  240
WPVPPPMGGP ATTLNMGVDY WGAPASVPVH GKVIAAPASA PSSNSRDIVL SDPAIQDERE  300
LKKQKRKQSN RESARRSRLR KQAEWEEVAN RADLLKQENS SLKEELKQLQ EKCDSLTSEN  360
TSLHEKLKAL EDEKSNGNWY KD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314320RRSRLRK
2314321RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665280.0BT066528.1 Zea mays full-length cDNA clone ZM_BFb0014J02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795520.10.0bZIP transcription factor 16-like isoform X1
RefseqXP_025795521.10.0bZIP transcription factor 16-like isoform X1
SwissprotQ501B21e-89BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A2S3ISY00.0A0A2S3ISY0_9POAL; Uncharacterized protein
STRINGPavir.Ib00998.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115063238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-54basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]