PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00861.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 340aa    MW: 36610.8 Da    PI: 9.893
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00861.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19176209134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Pahal.A00861.1 176 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 209
                     *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.95E-13167210No hitNo description
SMARTSM004011.8E-20170221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466174206IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-15174209IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.74E-15175207No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003204.7E-17176209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLMEGEKD QGLFPAFDVM KDPPILFPFM INNPVDQLQG QSSYGDQRLR  60
HQVLAESTHQ QFTDRMMMSG SDVFPRPSPF RPTIQSIDGD MIQRSAYDPY DIENKRADGS  120
ISGWAVAPPA KMKIMRKATS EYPEGGAARK PRRRAQAHQD ESQQLQQQAM GVVRVCSDCN  180
TTKTPLWRSG PRGPKSLCNA CGIRQRKARR AMAAAAAAAA ASNGGAPQVA SVASQAKPAK  240
KEKRADVDQS LPFKKRCKMV AVDHAVTAAK ATPTVAAPTK QDQDHVSSDK VAAAATAVSL  300
QSKVATPDPP AMSIHAFPAD EITDAAMLLM TLSCGLVRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795730.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-123CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2S3GN700.0A0A2S3GN70_9POAL; Uncharacterized protein
STRINGPavir.Ab00790.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-22cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]