PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00175.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BES1
Protein Properties Length: 651aa    MW: 73334.9 Da    PI: 6.4656
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00175.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822159.52.3e-49431815134
          DUF822   5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.s 96 
                      +++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +p+    + + g ++ as e++   +
  Pahal.A00175.1  43 DREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRSSNQPPlpPPPPQLGMFQVASGETPAFiN 137
                     6799*******************************************************************99989999**************9* PP

          DUF822  97 slkssalaspvesysaspksssfpspssldsislasa......a 134
                     +l+s+++ +p++s+++ +++++++spsslds+ ++ +       
  Pahal.A00175.1 138 TLNSYTIGTPLDSQASALQTDDSLSPSSLDSVVAERSiktenfG 181
                     ********************************987665554442 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.2E-4742191IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.809.9E-170210644IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514452.81E-167211644IPR017853Glycoside hydrolase superfamily
PfamPF013739.0E-81234605IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.8E-52248262IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.8E-52269287IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.8E-52291312IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.8E-52384406IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.8E-52457476IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.8E-52491507IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.8E-52508519IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.8E-52526549IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.8E-52564586IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MSMKLPHPPL GEEELSPPPQ RRPRGFASGP APSAGAPPRR RGDREREREK ERTKLRERHR  60
RAITSRMLAG LRQHGNFPLP ARADMNDVLA ALARAAGWTV HPDGTTFRSS NQPPLPPPPP  120
QLGMFQVASG ETPAFINTLN SYTIGTPLDS QASALQTDDS LSPSSLDSVV AERSIKTENF  180
GNSSSVNSLN CMDNNQLLRS SAMLAGDYTK TPYIPVYASL PMGIINSHCQ LVDPEGVRTE  240
LRHLKSLNVD GVIVYCWWGI VEAWIPRKYE WSGYRDLFGI IKEFKLKVQV VLSFHGSGET  300
GSGDVLISLP NWIMEIAKEN QDIFFTDREG RRNTECLSWG IDKERVLRGR SGIEVYFDFM  360
RSFHMEFRNL SEEGLISAIE IGLGASGELR YPSFPERMGW KYPGIGEFQC YDRYMQKNLR  420
QSALSRGHLF WARGPDNAGY YNSRPHETGF FCDGGDYDSY YGRFFLNWYS GILIDHVDQV  480
LSLAALAFDG AEIVVKIPSI YWWYRTASHA AELTAGFYNP TNRDGYSPVL KMLKKHSVIL  540
KLVCYGEEFT VQENDEAFVD PEGLTWQLMN AAWDHGLPLC IESALPCLDG DMYSQILDTA  600
KPRNDPDRHH ASFFAYRQQP PFLLQRDACY PELRTFVKCM HGEAPQNGEG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12121364311444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811466.10.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2S3GL090.0A0A2S3GL09_9POAL; Beta-amylase
STRINGPavir.Aa03184.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]