PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016775
Common NameHB3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91725.4 Da    PI: 6.2155
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S58330571PU_refUnigeneView CDS
PUT-175a-Picea_glauca-46220PU_unrefplantGDBView CDS
gnl|UG|Pgl#S40885710PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-181573357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pgl016775 15 KYVRYTSEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
               6789*****************************************************97 PP

2START163.81.3e-511613692205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++  ++l +  +g  g+++l +++++
  Pgl016775 161 IAEETLAEFLSKAKGAAVDWVQMPGMKPGPDSIGIVAISNTCNGVAARACGLVGLDPT-KVAEILKDRPSWLRDCRCLDVLTAFPTGngGTIELLYMQTY 259
                7899******************************************************.8888888888*****************999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a ++l++ Rdf+++Ry+  l++g++v++++S++ +q  p+    +++vRae+lpSg+li+p+++g+s + +v+h+dl+ ++++++lr+l++s+++ ++k+
  Pgl016775 260 AATTLASaRDFWTLRYTTVLEDGSLVVCERSLSGTQGGPSippVQHFVRAEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYESSTVLAQKM 359
                ****9999*****************************99999999******************************************************* PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                + a+l+r+++
  Pgl016775 360 TIAALRRLRQ 369
                *****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7751074IPR001356Homeobox domain
SMARTSM003891.1E-141278IPR001356Homeobox domain
CDDcd000868.18E-161575No hitNo description
PfamPF000467.6E-161573IPR001356Homeobox domain
SuperFamilySSF466894.71E-161577IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-181773IPR009057Homeodomain-like
CDDcd146861.82E-667106No hitNo description
PROSITE profilePS5084825.731151366IPR002913START domain
CDDcd088753.22E-74155371No hitNo description
SMARTSM002342.1E-37160370IPR002913START domain
SuperFamilySSF559615.08E-36160372No hitNo description
Gene3DG3DSA:3.30.530.201.6E-23161366IPR023393START-like domain
PfamPF018523.8E-49161369IPR002913START domain
PfamPF086704.5E-47696838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MANNKDAKNS MDTSKYVRYT SEQVEALERV YSECPKPSSL RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYMRQQLQ  120
NASVAATDTS CESVVTSGQH QHNPTPQHPP RDASPAGLLS IAEETLAEFL SKAKGAAVDW  180
VQMPGMKPGP DSIGIVAISN TCNGVAARAC GLVGLDPTKV AEILKDRPSW LRDCRCLDVL  240
TAFPTGNGGT IELLYMQTYA ATTLASARDF WTLRYTTVLE DGSLVVCERS LSGTQGGPSI  300
PPVQHFVRAE MLPSGYLIQP CEGGGSIIRI VDHMDLEPWS VPEVLRPLYE SSTVLAQKMT  360
IAALRRLRQI AQEATGEVVF GWGRQPAVLR TFSQRLSRGF NEAVNGFTDD GWSLLGSDGV  420
EDVTIAINSS PNKHFASQVN ASNGLTTLGG GILCAKASML LQNVPPALLV RFLREHRSEW  480
ADSNIDAYSA AALKASPYSV PGSRAGGFSG SQVILPLAHT VEHEEFLEVI KLEGHGLTQE  540
EAVLSRDMFL LQLCSGIDEN AAGACAELVF APIDESFADD APLLPSGFRV IPLESRTDGS  600
GGPNRTLDLA SALEVGSAGA RTSGDSGANS NLRSVLTIAF QFTYESHLRE NVAAMARQYV  660
RSVVASVQRV AMALAPSRLS AHVGPRPPPG TPEALTLARW ICQSYRLHIG VDLFRADCEA  720
SESVLKLLWH HSDAIMCCSV KSLPVFTFAN QAGLDMLETT LVALQDISLD KILDENGRKS  780
FFTDYGQIIQ QGYAYLPAGI CLSSMGRPAS YDRAIAWKVL NDEDSTHCIV FMFMNWSFM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.42120.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247499.10.0PREDICTED: homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLE7DX240.0E7DX24_PICGL; Class III homeodomain leucine zipper protein
STRINGXP_010247498.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. C
    Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees.
    BMC Plant Biol., 2010. 10: p. 273
    [PMID:21143995]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]