PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016719
Common NameHB6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 849aa    MW: 93640.1 Da    PI: 6.043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S58330567PU_refUnigeneView CDS
PUT-175a-Picea_glauca-18636PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-181775357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+++Le+++ ++++p+a +r++L +++    +++ +q+kvWFqNrR +ek+
  Pgl016719 17 KYVRYTEEQVQALEKFYSECPKPNAFRRQQLIRECpllsNIEPKQIKVWFQNRRCREKQ 75
               5678*****************************************************97 PP

2START125.66.3e-401743762203
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aeea+ e+++ka+ +   W + + +++g++++ +++ +++++g a+ra+ +v m++   v+++l+d++ W  +++++e+l + ++   ++++l +++++
  Pgl016719 174 FAEEALSEFLAKATGTGIDWIQIPGMKPGPDSIGIVAVGHGCDGAAARACSLVGMESS-RVADVLKDRPGWFCDCRRMEILGAFTTSsgATVELLYSQMY 272
                5899******************************************************.9**********************9876655*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwva 198
                 +++l   Rdf ++Ry+  l++  +v++++S++    pp + ++vRae+l Sg+li+p+++ +s v +v+h+dl++   +++lr++++s+++ ++k++ +
  Pgl016719 273 SPTTLTQaRDFCTLRYTSVLEDRNLVVCERSLNLGMVPP-NEGFVRAEMLSSGYLIRPCGGVGSIVYIVDHMDLEAGRAPEVLRPMYESSAILAQKMTIS 371
                **999988*******************************.8**********************************************************9 PP

                HTXXX CS
      START 199 tlqrq 203
                +l+++
  Pgl016719 372 ALRHL 376
                99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1751276IPR001356Homeobox domain
SMARTSM003895.3E-151480IPR001356Homeobox domain
SuperFamilySSF466891.92E-161680IPR009057Homeodomain-like
CDDcd000861.85E-161777No hitNo description
PfamPF000467.8E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-171975IPR009057Homeodomain-like
CDDcd146860.0037869106No hitNo description
PROSITE profilePS5084823.795164388IPR002913START domain
SMARTSM002342.1E-25173379IPR002913START domain
SuperFamilySSF559612.2E-34174381No hitNo description
PfamPF018521.7E-37175376IPR002913START domain
Gene3DG3DSA:3.30.530.202.6E-20212375IPR023393START-like domain
PfamPF086704.5E-42709849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MAVARGKDGK YGFDSGKYVR YTEEQVQALE KFYSECPKPN AFRRQQLIRE CPLLSNIEPK  60
QIKVWFQNRR CREKQRKEAT RLLALNEKLK AMNKVLVKQN DNLSKQAFQF VSQNNFLRRQ  120
LKLLKEQSTN LDGSKDALVT TETSSISRLV SGLRKHRVPQ PPPWDVNPAW LLAFAEEALS  180
EFLAKATGTG IDWIQIPGMK PGPDSIGIVA VGHGCDGAAA RACSLVGMES SRVADVLKDR  240
PGWFCDCRRM EILGAFTTSS GATVELLYSQ MYSPTTLTQA RDFCTLRYTS VLEDRNLVVC  300
ERSLNLGMVP PNEGFVRAEM LSSGYLIRPC GGVGSIVYIV DHMDLEAGRA PEVLRPMYES  360
SAILAQKMTI SALRHLRSLA QEAAGEVVTG GTLQPAALRA LSLRIARSFN DAINSFPEDG  420
WFSVASDGID DISISLNSSW SPRTVGLKCS SSNNLWSDGD GGVLCAKASM LLQNVPPAVL  480
IRFLREHRSE WADWADCEHD VSCSATLRTR VYGAAALGGA ELGRREVPMP LAHSEHQEIM  540
ELVKFEGYDS ARDGALVSKE MYLLQLCNGI DETAIGDCAQ LVFAPVDGAL SDDIPLLPSG  600
FRVIPLDTDF MDGYGMSCTL DLASMLEGGS DMDAAKTETG ISSNNLRSIV TIAFQFGYET  660
HNCDSVSVAA RKYMRTVVAS VQRVAMAIAP RVGSTLGLRN LSGTSEVLTL VKRIVGSYRI  720
NFGMDLLRKQ PSNNEELFKM VWHHSDALIC CTCKSLPEFI FANEAALDML ETTSGGLQDL  780
RWDQTLDETE KKNAYSDITK VMQQGFAYLP AGIRLSSMGR PVAYERAMAW SIVDDNESMP  840
CVAFMFVNW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.50170.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905420.10.0homeobox-leucine zipper protein HOX32 isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLE7DX270.0E7DX27_PICGL; Class III homeodomain leucine zipper protein
STRINGGSMUA_Achr5P02420_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. C
    Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees.
    BMC Plant Biol., 2010. 10: p. 273
    [PMID:21143995]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]