PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016277
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 184aa    MW: 20572.7 Da    PI: 4.6569
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40943200PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.13.9e-15656150
        NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkk 50
               lp Gfr hPtdeel+ +yLk k+++    ++ evi+evd+y++ePwdLp +
  Pgl016277  6 LPSGFRSHPTDEELIFNYLKGKLKNGLkASEVEVIPEVDLYRCEPWDLPVH 56
               699*******************998764555689**************942 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-13356IPR003441NAC domain
PROSITE profilePS5100510.816151IPR003441NAC domain
PfamPF023658.5E-5751IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
METFALPSGF RSHPTDEELI FNYLKGKLKN GLKASEVEVI PEVDLYRCEP WDLPVHSTEI  60
AVLERGRTCE GDLHGEASYV TGVLCYFGLL ELQSINDVGC MLEGIFYSRR VQIPMPMNCI  120
NYGGDTVMEA AFMREHPPFE GGIFVMGVSS SSVGALLWEV HLKHYGALME EVTLLIVAHS  180
SRVW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.309480.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-14NAC domain containing protein 28