PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl015978
Common NameHB4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 831aa    MW: 91062.2 Da    PI: 6.129
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S58330569PU_refUnigeneView CDS
PUT-175a-Picea_glauca-12549268PU_unrefplantGDBView CDS
gnl|UG|Pgl#S40873703PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-181673457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pgl015978 16 YVRYTAEQVEALERLYNDCPKPSSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 73
               5789****************************************************97 PP

2START152.53.7e-481613682204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee++++l++ka++++  W +++ +++g++++ +++ s++++g a+ra+g+   ++   v+++l+d++ W ++++   +l +  +g  g++++ +++++
  Pgl015978 161 IAEETLTQLLSKATETAVDWIQMPGMKPGPDSIGIVTISNSCTGVAARACGFAGLEPS-KVADILKDRPAWLHDCRCLNVLTAFPTGkgGTVEVLYTQMY 259
                7899******************************************************.9999999999******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rd +++Ry+  l++g++v++++S++  q+ p+    +++vRa++lpSg+li+p+++g++ +++v+h+dl+ +++++++r+l++s+++ +++ 
  Pgl015978 260 APTTLAPaRDLLTLRYTSLLEDGSLVVCERSLTGIQSGPNmpsVQHFVRAQMLPSGYLIRPCEGGGCIIHIVDHMDLEPWSVPEVIRPLYESSAVLATRV 359
                **********************************999999888899****************************************************99 PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                +  +l++++
  Pgl015978 360 TITALRHLR 368
                999888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1271074IPR001356Homeobox domain
SMARTSM003892.7E-141278IPR001356Homeobox domain
CDDcd000863.29E-151575No hitNo description
SuperFamilySSF466895.56E-161577IPR009057Homeodomain-like
PfamPF000461.1E-151673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-171773IPR009057Homeodomain-like
CDDcd146861.75E-667106No hitNo description
PROSITE profilePS5084823.403151379IPR002913START domain
CDDcd088752.48E-69155369No hitNo description
SuperFamilySSF559611.79E-36160372No hitNo description
Gene3DG3DSA:3.30.530.201.0E-21160353IPR023393START-like domain
SMARTSM002341.8E-34160370IPR002913START domain
PfamPF018522.1E-45161368IPR002913START domain
PfamPF086707.1E-50691831IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MTVVTAQSCG MEAGKYVRYT AEQVEALERL YNDCPKPSSL RRQQLIRECP ILSHIEPKQI  60
KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRQQIQ  120
TVSIATTDTS CESVVTSGPH PHHLTPQHPP RDASPAGFLS IAEETLTQLL SKATETAVDW  180
IQMPGMKPGP DSIGIVTISN SCTGVAARAC GFAGLEPSKV ADILKDRPAW LHDCRCLNVL  240
TAFPTGKGGT VEVLYTQMYA PTTLAPARDL LTLRYTSLLE DGSLVVCERS LTGIQSGPNM  300
PSVQHFVRAQ MLPSGYLIRP CEGGGCIIHI VDHMDLEPWS VPEVIRPLYE SSAVLATRVT  360
ITALRHLRQV AQEVSGEVVL GWGRQPAALR AFSQRLCRGF NDAVNGFVDD GWSLLGSDGV  420
EDVIIAINSS PSKFLGSQLA SSDGISALNG GILCAKASML LQNVPPALLV RFLREHRSEW  480
ADCNVDAYSS ATMKANAYNV PGSLGGITGS QVILPLAHTV EHEEFLEVIK LEGQGLTHEE  540
ALLSKDMFLL QLCSGIDEHA VGFCAQLVFA PIDASFADDA PLLPSGFRVI PLESGSDASP  600
PNRTLDLASA LEVGSAGTRA SGDCGDSPYN LRSVLTIAFQ FTYQNHVRDS VAAMARQYVR  660
HVIASVQRVA IALAPSLQSP HPPPGTPEAL TLARWICESY RMHLGLELIE SSSETNESVL  720
KLLWHHSDGI MCCSWKTLPV FTFANQAGLD MLETTLVALQ DISLEKILDE NGRKRLCSDF  780
TQIMQQGYAY LPAGICISSM GRPVSYDRAI AWKVLNDEDV THCISFMFVN W
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.71640.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853643.20.0homeobox-leucine zipper protein ATHB-15
RefseqXP_020528699.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLE7DX250.0E7DX25_PICGL; Class III homeodomain leucine zipper protein
STRINGERN151100.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. C
    Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees.
    BMC Plant Biol., 2010. 10: p. 273
    [PMID:21143995]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]