PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl015944
Common NameHB5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92609.7 Da    PI: 6.3705
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S58330568PU_refUnigeneView CDS
PUT-175a-Picea_glauca-3049271PU_unrefplantGDBView CDS
PUT-175a-Picea_glauca-3149262PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-181876357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pgl015944 18 KYVRYTAEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
               5679*****************************************************97 PP

2START164.57.6e-521663742205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  W +++ +++g++ + +++ s++++g a+ra+ +v  +++  v+e+l+d+  W ++++++++l + s+g  g+++l +++++
  Pgl015944 166 IAEETLTEFLSKAKGNAVEWIQMPGMKPGPDAIGIVTISHGCTGVAARACSLVGIDPT-KVAEILKDRTSWLRDCRSVDVLTAFSTGngGTVELLYMQMY 264
                789*******************************************************.8888888888******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+++Ry+  l++g++v++++S++ +q  p+    +++vRae+ pSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++k 
  Pgl015944 265 APTTLASaRDFWTLRYTSVLEDGSLVVCERSLSGTQGGPSmpaVQHFVRAEMQPSGYLIRPCEGGGSLIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKV 364
                ***************************************999899******************************************************* PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                ++a+l+++++
  Pgl015944 365 TMAALRHLRQ 374
                *****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7581377IPR001356Homeobox domain
SMARTSM003892.3E-151581IPR001356Homeobox domain
SuperFamilySSF466891.75E-161881IPR009057Homeodomain-like
PfamPF000466.5E-161876IPR001356Homeobox domain
CDDcd000863.97E-161878No hitNo description
Gene3DG3DSA:1.10.10.602.8E-182076IPR009057Homeodomain-like
CDDcd146861.84E-670109No hitNo description
PROSITE profilePS5084825.731156384IPR002913START domain
CDDcd088758.25E-81160376No hitNo description
Gene3DG3DSA:3.30.530.204.9E-24165371IPR023393START-like domain
SuperFamilySSF559614.81E-37165377No hitNo description
SMARTSM002348.1E-37165375IPR002913START domain
PfamPF018522.0E-49166374IPR002913START domain
SuperFamilySSF559614.53E-5405496No hitNo description
SuperFamilySSF559614.53E-5528608No hitNo description
PfamPF086701.6E-51702844IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MAVTSSKEGK FSGMDQGKYV RYTAEQVEAL ERLYHECPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
QLQNASIATT DTSCESVVTS VKHQQQNHLT PRDPPRDASP AGLLSIAEET LTEFLSKAKG  180
NAVEWIQMPG MKPGPDAIGI VTISHGCTGV AARACSLVGI DPTKVAEILK DRTSWLRDCR  240
SVDVLTAFST GNGGTVELLY MQMYAPTTLA SARDFWTLRY TSVLEDGSLV VCERSLSGTQ  300
GGPSMPAVQH FVRAEMQPSG YLIRPCEGGG SLIHIVDHMD LEPWSVPEVL RPLYESSTVL  360
AQKVTMAALR HLRQIAQEVS SDVVLGWGRQ PAALRTFSQR LCKGFNEAVN GFTDDGWSLM  420
GNDGMDDVTI LINSSPSKLL GQQFASSDGL PALGGGILCA KASMLLQNVP PALLVRFLRE  480
HRSEWADSNI DAYSAASWKA SPCTVPSSRI GGFGGGGQVI LPLAHTVEHE EFLEVIKLEN  540
NGLTQEEALL SRDMFLLQLC SGIDENAVGA CAELVFAPID ASLADSSPLL PSGFRVIPLD  600
SGMDGSSPNR TLDLASALEI GSAGTRTSVD YGGNSSNLRS VLTIAFQFTF ENHLRENVAT  660
MARQYVRGVV ASVQRVAMAL APSRLGSHLG PRLPPGTPEA LTLARWVCQS YRFHLGVELL  720
RPNSEVNESV LKTLWHHSDA IMCCSLKSLP IFTFANQAGL DMLETTLVAL QDISLEKILD  780
DNGRKSFCSD IAQIMQQGYA YLPAGVCVSS MGRPASYDRA IAWKVLNDEE NPHCIAFMFM  840
NWSFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.59160.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853643.20.0homeobox-leucine zipper protein ATHB-15
RefseqXP_020528699.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLE7DX260.0E7DX26_PICGL; Class III homeodomain leucine zipper protein
STRINGERN151100.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. C
    Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees.
    BMC Plant Biol., 2010. 10: p. 273
    [PMID:21143995]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]