PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl014902
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 125aa    MW: 13832.1 Da    PI: 4.8629
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S29730578PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC79.73.6e-254094152
      NF-YC  1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskace 52
               ql++fw +q   +e+a+dfk h+lPlarikki+kadedvkmisaeaPv+++kac 
  Pgl014902 40 QLQAFWGNQmreVEQAQDFKTHSLPLARIKKIMKADEDVKMISAEAPVVFAKACX 94
               89******9777799***************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.24E-143694IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.4E-195493IPR009072Histone-fold
PfamPF008086.6E-106294IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDQQQPTIPA LPQVGYGTNP YIAPPIGGPP HPQLASYHQQ LQAFWGNQMR EVEQAQDFKT  60
HSLPLARIKK IMKADEDVKM ISAEAPVVFA KACXDVHTGT DLEVMDSHRG EQEKNFAEDD  120
IAAAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-2247124279NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.225010.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648358.14e-28nuclear transcription factor Y subunit C-2
SwissprotQ8LCG74e-26NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA9NKR83e-63A9NKR8_PICSI; Uncharacterized protein
TrEMBLB2LSM23e-63B2LSM2_PICWI; HAP5B
STRINGBra003334.1-P1e-27(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-28nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]