PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012345
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 248aa    MW: 27645.3 Da    PI: 8.4688
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-250PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC158.21.3e-49621625102
      NF-YC   5 fwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
                 w++q   ie+a df+nh+lPlarikki+k+de+vkmisaeaPv+++kace+fi eltlr+w+h+ee+krrtl+k+diaaa++rtdifdfl+di prdel
  Pgl012345  62 SWANQmqgIEQAVDFRNHSLPLARIKKIMKSDEHVKMISAEAPVVFAKACEMFINELTLRAWNHTEETKRRTLQKNDIAAAIARTDIFDFLIDILPRDEL 161
                6998877789****************************************************************************************87 PP

      NF-YC 102 k 102
                k
  Pgl012345 162 K 162
                5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.11E-3064152IPR009072Histone-fold
PfamPF008081.4E-2280143IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.4E-3781158IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MPIQYYGATP YQTAQILPSI AHGTFQQPLI SSNAHATALP LSAHLNQLAY HHQKHQGKVE  60
ISWANQMQGI EQAVDFRNHS LPLARIKKIM KSDEHVKMIS AEAPVVFAKA CEMFINELTL  120
RAWNHTEETK RRTLQKNDIA AAIARTDIFD FLIDILPRDE LKEDQVITLG TPTSSLSVGG  180
SSSNAGVANS FPYYYLPNQH SAPHGVTVGN PMHPAIYMQQ PRSPAAYMQN MLQRGHMHTD  240
QSRSHNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B1e-39751581497NF-YC
4awl_C9e-40751581194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B9e-40751581194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.95460.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346078.17e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008346079.17e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356118.17e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356119.17e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008372003.17e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG74e-62NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
SwissprotQ9ZVL34e-62NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLA9NTJ81e-116A9NTJ8_PICSI; Putative uncharacterized protein
STRINGPOPTR_0005s09770.15e-71(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-60nuclear factor Y, subunit C2