PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009314
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 476aa    MW: 49143.1 Da    PI: 10.0532
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-15909PU_refplantGDBView CDS
gnl|UG|Pgl#S55334164PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1211.4e-3793192289
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg........k 89 
                ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+pai+e+tgt++ +a ++    +  ss+ s+ +ss++        +
  Pgl009314  93 PPKRSSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPAIIEATGTGTVPALAMsmgnSVRSSVPSTTASSATirplaiglR 192
                689*************************************************************999995443222222222222222222545444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3298198IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01699153IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MESGGHGNGE EQQQQGTHLS VGSFAQTTVT MGGASGIGPP ANSPSSASAQ NTDENKSSAL  60
ISGISQSVEV KQEVQREGEL KDQQQSVAVK KTPPKRSSTK DRHTKVEGRG RRIRMPATCA  120
ARIFQLTREL GHKSDGETIR WLLEQAEPAI IEATGTGTVP ALAMSMGNSV RSSVPSTTAS  180
SATIRPLAIG LRAKTEWDES EDKKNVLDRT RKITAGPDAS GGSRIVQDGQ TVGGGSVKKR  240
ARGLTVKKEH DPLTASASIN AVPAKPAPTA RQTPLQPPPQ AQVAPLSQNT TPPQASGLMS  300
MWAVTPDRGG SMPGAFWMLP VTGSSASAPG IVGGGPSNQQ IWTFPSGSVG PMYSMAAAAA  360
AAAAPPGSTN PSSMTNPGVM PLTSVLPSGM IMPRLNLPGG MGLEFPGGNL RHMPLTSMLL  420
QDTSQAGTGL GLGAEGHLGM LAALSAYNKN TKSEHQFMGS SHQQQGESGD DPANSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.206940.0somatic embryo| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QTA80.0A0A0C9QTA8_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10759_2066 transcribed RNA sequence
STRINGPP1S67_183V6.12e-78(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-41TCP family protein