PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007328
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 201aa    MW: 23634.1 Da    PI: 6.3673
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-20965PU_refplantGDBView CDS
gnl|UG|Pgl#S55334928PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.15.5e-53271311102
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw++q   +e+ ++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ dfl+divp
  Pgl007328  27 QLQMFWQQQmqeMEQIAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVP 126
                89*****99888999************************************************************************************* PP

      NF-YC  98 rdelk 102
                rde+k
  Pgl007328 127 RDEVK 131
                **875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.53E-3117121IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.5E-3643112IPR009072Histone-fold
PfamPF008085.3E-2149112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MPMQHHQQQL QGSMQPHLHY MQIQKQQLQM FWQQQMQEME QIAEFKQHQL PLARIKKIMK  60
SDEDVKMISA EAPVLFSKAC ELFILELTLR SWLHTEENKR RTLQRNDIAG AISRGDVLDF  120
LLDIVPRDEV KDEEYGGHWP GIPHAESMSY GGIHFPLMHA QPYHHNLNPD VMTAQQTMSQ  180
QLMSQQPLMP DQQLMYQPPQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-422812719119HapE
4g92_C3e-422812719119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.57700.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011622041.13e-74PREDICTED: uncharacterized protein LOC18430586
SwissprotQ9FMV51e-62NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA9NUT01e-146A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S315_9V6.33e-77(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-53nuclear factor Y, subunit C4