PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 284aa    MW: 32185 Da    PI: 7.3443
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-5031PU_refplantGDBView CDS
gnl|UG|Pgl#S55347580PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.6e-5431301128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++PwdLp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ ++++
  Pgl005530   3 LPPGFRFHPTDEELVVHYLKKKATSSPLPV-SIIAEIDLYKFDPWDLPGKTTYGENEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPILTSaSRQK 101
                79****************************.89***************8888899*************************************99878888 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +g+kk Lvfy+gr pkg ktdW+mheyrl
  Pgl005530 102 IGVKKALVFYRGRPPKGIKTDWIMHEYRL 130
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-652161IPR003441NAC domain
PROSITE profilePS5100562.6633160IPR003441NAC domain
PfamPF023653.6E-284130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MELPPGFRFH PTDEELVVHY LKKKATSSPL PVSIIAEIDL YKFDPWDLPG KTTYGENEWY  60
FFSPRDRKYP NGARPNRAAA SGYWKATGTD KPILTSASRQ KIGVKKALVF YRGRPPKGIK  120
TDWIMHEYRL ADGISKPSSF ASRKGSLRLD DWVLCRIYKK NRHSPRMAES EKDESHVEEG  180
SSSLLDIHHD QRLQLPKSGP FSSLLASAVD ELDESLIDVE SSQETGYQGN PLFPSNSRNN  240
NISNNNDSEN GPTILNTLQP QAFHEEKVLG TMGDFQQIYQ SHFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-73116115166NO APICAL MERISTEM PROTEIN
1ut4_B1e-73116115166NO APICAL MERISTEM PROTEIN
1ut7_A1e-73116115166NO APICAL MERISTEM PROTEIN
1ut7_B1e-73116115166NO APICAL MERISTEM PROTEIN
3swm_A1e-73116118169NAC domain-containing protein 19
3swm_B1e-73116118169NAC domain-containing protein 19
3swm_C1e-73116118169NAC domain-containing protein 19
3swm_D1e-73116118169NAC domain-containing protein 19
3swp_A1e-73116118169NAC domain-containing protein 19
3swp_B1e-73116118169NAC domain-containing protein 19
3swp_C1e-73116118169NAC domain-containing protein 19
3swp_D1e-73116118169NAC domain-containing protein 19
4dul_A1e-73116115166NAC domain-containing protein 19
4dul_B1e-73116115166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.166930.0needle
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269|PubMed:22278768}.
UniprotTISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:22278768}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294335.11e-100NAC transcription factor 56-like isoform X2
SwissprotQ8H4S42e-91NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLA0A482ERL11e-171A0A482ERL1_9SPER; NAC3 domain protein
STRINGERN033801e-100(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.16e-93NAC domain containing protein 25
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]