PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32251.8 Da    PI: 6.176
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-4100PU_refplantGDBView CDS
gnl|UG|Pgl#S40928358PU_unrefUnigeneView CDS
gnl|UG|Pgl#S55338708PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18140194256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq   Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  Pgl005428 140 RKKLRLSKEQSALLEESFREHHTLNPKQKNALAKRLNLKSRQVEVWFQNRRARTK 194
                788899***********************************************98 PP

2HD-ZIP_I/II122.52e-39140229191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq++lLEesF+e+++L+p++K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++eveeLr ++
    Pgl005428 140 RKKLRLSKEQSALLEESFREHHTLNPKQKNALAKRLNLKSRQVEVWFQNRRARTKLKQTEMDCELLKRCCETLTEENRRLQREVEELR-AI 229
                  69*************************************************************************************9.44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-18125195IPR009057Homeodomain-like
SuperFamilySSF466891.63E-18127197IPR009057Homeodomain-like
PROSITE profilePS5007117.119136196IPR001356Homeobox domain
SMARTSM003891.4E-15138200IPR001356Homeobox domain
CDDcd000862.08E-16139197No hitNo description
PfamPF000469.3E-16140194IPR001356Homeobox domain
PROSITE patternPS000270171194IPR017970Homeobox, conserved site
SMARTSM003404.1E-23196239IPR003106Leucine zipper, homeobox-associated
PfamPF021831.6E-10196229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
XHEEYLSVDL TMAVSAGPGI THSHGSEVGA AQLADTSSSQ TAGYLRNFDM NRLPSGTDEE  60
GGGGSSSAVS TVSPFLSDIV VRYGEKDNGT WDGEVNERTH YQDQGLYNQN TDSLRNIARN  120
CEEDEGDHVS AGGDDSPPPR KKLRLSKEQS ALLEESFREH HTLNPKQKNA LAKRLNLKSR  180
QVEVWFQNRR ARTKLKQTEM DCELLKRCCE TLTEENRRLQ REVEELRAIK VAPPCVIAQD  240
FYMPLPAATL TMCPSCERVG SSIDMKRGAL TFAKPFYYLS NLRQPFAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188196RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.304000.0needle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002974113.22e-81homeobox-leucine zipper protein HOX19
SwissprotA2YW031e-61HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD01e-61HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A176VUU42e-77A0A176VUU4_MARPO; Uncharacterized protein
TrEMBLA0A2R6WPH03e-77A0A2R6WPH0_MARPO; Uncharacterized protein
STRINGPP1S42_217V6.14e-77(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-61homeobox from Arabidopsis thaliana