PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004923
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 312aa    MW: 35432.6 Da    PI: 6.6793
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-793PU_refplantGDBView CDS
gnl|UG|Pgl#S55343455PU_unrefUnigeneView CDS
gnl|UG|Pgl#S48362548PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC162.27.7e-511192241102
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                q+++fw++q   ie+a df+nh+lPlarikki+k+d e+v+misaeaPv+++kace+fi eltlr+w+h+eenkrrtl+k+diaaa++rtdifdfl+div
  Pgl004923 119 QIEVFWANQmqeIEQAVDFRNHSLPLARIKKIMKSDdENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLIDIV 218
                6889****9878899*******************96267************************************************************* PP

      NF-YC  97 prdelk 102
                prdelk
  Pgl004923 219 PRDELK 224
                ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.21E-3291214IPR009072Histone-fold
PfamPF008081.9E-22141205IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.7E-37142220IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
QPDVTEDLPA LFGFRSQISP SVEERLVSIQ NSGIAALGFD FGXNMEEHSA MQHMPMHYRA  60
MPYPNAQIQP NIAAHGAFQQ PPIHAHHHAL SSHHNQLPYQ HQQQIHQHQR QLHHQQQQQI  120
EVFWANQMQE IEQAVDFRNH SLPLARIKKI MKSDDENVRM ISAEAPVVFA KACEMFINEL  180
TLRAWIHTEE NKRRTLQKND IAAAIARTDI FDFLIDIVPR DELKEDQVIN LGNPRSALSV  240
GSSSTNAAAG ANSIPYYYLP NQHSVPHGVF VGKPMDPTIY MQQPQSPVAY MPNIWQWGHM  300
QADQSKSPNP GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-50127220395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.221730.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008356118.21e-73nuclear transcription factor Y subunit C-2-like
RefseqXP_018847918.11e-73PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ9FMV53e-64NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA9NTJ80.0A9NTJ8_PICSI; Uncharacterized protein
STRINGXP_008346078.19e-74(Malus domestica)
STRINGXP_008356118.19e-74(Malus domestica)
STRINGXP_008372003.19e-74(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-63nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]