PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 348aa    MW: 39046.7 Da    PI: 7.229
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-26283PU_refplantGDBView CDS
gnl|UG|Pgl#S55349153PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.18.2e-561122151101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+filelt+rsw+haeenkrrtl+k+diaaa+trtdifdflvdivp
  Pgl004249 112 QLQMFWAFQmqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTMRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 211
                89****98866789************************************************************************************** PP

      NF-YC  98 rdel 101
                rd+l
  Pgl004249 212 RDDL 215
                **87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.05E-3592206IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.0E-38126198IPR009072Histone-fold
PfamPF008085.6E-21134197IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
XKIERPQREI FIEYVKGFVG GGSAFIARTV LGQDKRGQTA MDHHNHHQHH PSSSSGGAAP  60
QGMSQGYPGG AAAPPTPVGM QGQAGQQPQP GLHQSGAQQA FHHHHMQQQQ QQLQMFWAFQ  120
MQEIEQVSDF KNHQLPLARI KKIMKADEDV RMISAEAPVL FAKACEMFIL ELTMRSWIHA  180
EENKRRTLQK NDIAAAITRT DIFDFLVDIV PRDDLKEEGL GLGFARGGVT PEGSFYYPPP  240
SMPQSPHQQG MMGPSSIMMG RPAPLQMDPS AMYMQQQQPP RPYGMPPHPH QPMWQHPHHP  300
HPHQQQMPDG QSYGHPHQQQ QHLPDGQSYG QHQMTDEHSY GTPPRSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-55120212395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.29570.0root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582162.16e-77nuclear transcription factor Y subunit C-1
SwissprotQ9SMP04e-74NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA9NKD31e-168A9NKD3_PICSI; Uncharacterized protein
STRINGXP_002511172.13e-76(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.14e-62nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]