PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003143
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 415aa    MW: 46071.3 Da    PI: 5.992
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-9643PU_refplantGDBView CDS
gnl|UG|Pgl#S40860825PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.5e-078402655
        AP2 26 g...krkrfslgkfgtaeeAakaaiaarkkleg 55
               g   k ++++lg ++ +e+Aa+a++ a++k++g
  Pgl003143  8 GqtrKGRQVYLGGYDKEEKAARAYDLAALKYWG 40
               335344*************************98 PP

2AP248.22.7e-1583134155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pgl003143  83 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 134
                78****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.339148IPR001471AP2/ERF domain
SMARTSM003805.0E-12554IPR001471AP2/ERF domain
PfamPF008474.0E-5840IPR001471AP2/ERF domain
CDDcd000185.32E-14848No hitNo description
SuperFamilySSF541717.85E-111050IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-111149IPR001471AP2/ERF domain
PfamPF008473.8E-1083134IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1883144IPR016177DNA-binding domain
CDDcd000182.16E-2583144No hitNo description
Gene3DG3DSA:3.30.730.102.4E-1884142IPR001471AP2/ERF domain
SMARTSM003803.6E-3384148IPR001471AP2/ERF domain
PROSITE profilePS5103218.91384142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
XNSCRKEGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG PSTHINFPLE TYEKEIEEMK  60
NMTRQEYVAN LRRKSSGFSR GASVYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE  120
AAEAYDIAAI KFRGISAVTN FDISKYDVQR ICSSSTLIAG DLAKRTKEIE QSSEPSGDSP  180
LQVEAAPLQI EAAHNSQSRS HNDNAKDGNN STSNDSNHNN NVVGSISDKI AQDWQLMDSN  240
SDQDQHKVFN NWVVEHEDRK PDQSFIESLQ LGPHSHSAVL HDLIGLDSST AADSDQSNNE  300
ETSRLLTDIS GGNNSLLTMS NASNTGPVES PVNSASENEE GHHRKIPVYD NMMPAGEFPQ  360
ALFFSSPQQA SKLVKYENGS TTLSPWMIPP NTVQPLQSRP NLSVGHLPMF ALWNE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.231970.0stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061622.11e-112PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1
TrEMBLQ76H960.0Q76H96_PINTH; AINTEGUMENTA-like protein
STRINGXP_010061621.11e-111(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.13e-97AP2 family protein