PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002227
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 499aa    MW: 53069.6 Da    PI: 7.5974
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-41707PU_refplantGDBView CDS
gnl|UG|Pgl#S55334990PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.52.9e-391382603128
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskks 100
                +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+ +  + s +ss+s      + ++   ++ + 
  Pgl002227 138 AKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANIAsLNISTRSSSS------SISAPLkPPYFH 231
                799****************************************************************977742222222222......222222233333 PP

        TCP 101 qksaasalnlakesrakararare.rtre 128
                + s + + n+a+   ++ r+r++  r +e
  Pgl002227 232 SGSLNLNANFAARLDQQIRSRNEWeRAQE 260
                33333333333333344444433222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-40142325IPR005333Transcription factor, TCP
PROSITE profilePS5136927.636143197IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MSRIWASVGN LEELGSSSME SHVDNGRTKF NLETGMQPLQ LLSYDQEEQR MVGYNVQTAS  60
NRQNQDDHGR SSLGSGYLAQ AALASSQVDS SLAMSAAKLY SNTETAIVIP KAHEQKTTSA  120
AAAAAVQGTE DASKKPLAKR SSTKDRHTKV DGRGRRIRMP ATCAARVFQL TRELGHKSDG  180
ETIEWLLQQA EPAVIAATGT GTIPANIASL NISTRSSSSS ISAPLKPPYF HSGSLNLNAN  240
FAARLDQQIR SRNEWERAQE ERSGMNTGLG IGHHHTDSSG LTQALIHEQN LINDRAEIND  300
LMNSECGNSR KRLREEQQQQ QFKNMQPMWA VTPATGLSSA GQNMPGTFWM LPPTPGVMGH  360
AGPGSDPIWT FPASSGGAMY RTSMSSGLHF MPRPINLNSS STSMGHVQFG SMLMQGPAGS  420
GSGSGAGAGS GSASQQLPQT GLGLGGGGGS NETHLGMLAA LNAAYNNRSM NNNSEHHQSM  480
GSAGHNHADS GEDRRDNSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.96740.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S2X31e-123A0A0C9S2X3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_16820_1789 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.14e-41TCP family protein