PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001148
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 201aa    MW: 22309.5 Da    PI: 6.6814
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-2724PU_refplantGDBView CDS
PUT-175a-Picea_glauca-2726PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.61e-54401431101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw +q   +e+a+dfk h+lPlarikki+kadedvkmisaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+ rtdifdflvdivp
  Pgl001148  40 QLQAFWGNQmreVEQAQDFKTHSLPLARIKKIMKADEDVKMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIGRTDIFDFLVDIVP 139
                89******9777799************************************************************************************* PP

      NF-YC  98 rdel 101
                rde 
  Pgl001148 140 RDEF 143
                *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-3236134IPR009072Histone-fold
PfamPF008082.2E-2162125IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-3763140IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDQQQPTIPA LPQVGYGTNP YIAPPIGGPP HPQLASYHQQ LQAFWGNQMR EVEQAQDFKT  60
HSLPLARIKK IMKADEDVKM ISAEAPVVFA KACEMFILEL TLRSWIHTEE NKRRTLQKND  120
IAAAIGRTDI FDFLVDIVPR DEFKDEGLVI PRAAGAVPFM GPGDNVPSYY YVAQQAPNMA  180
AYAPPTQQMR SKAPAPPHGS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-5648140395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.225010.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775727.18e-72nuclear transcription factor Y subunit C-4-like
RefseqXP_008775728.18e-72nuclear transcription factor Y subunit C-4-like
RefseqXP_008775729.18e-72nuclear transcription factor Y subunit C-4-like
RefseqXP_026656552.18e-72nuclear transcription factor Y subunit C-4-like
RefseqXP_026656553.18e-72nuclear transcription factor Y subunit C-4-like
SwissprotQ8LCG78e-68NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA9NKR81e-147A9NKR8_PICSI; Uncharacterized protein
TrEMBLB2LSM21e-147B2LSM2_PICWI; HAP5B
STRINGXP_008775725.13e-71(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-70nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]