PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001148
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 201aa    MW: 22309.5 Da    PI: 6.6814
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-2724PU_refplantGDBView CDS
PUT-175a-Picea_glauca-2726PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.61e-54401431101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw +q   +e+a+dfk h+lPlarikki+kadedvkmisaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+ rtdifdflvdivp
  Pgl001148  40 QLQAFWGNQmreVEQAQDFKTHSLPLARIKKIMKADEDVKMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIGRTDIFDFLVDIVP 139
                89******9777799************************************************************************************* PP

      NF-YC  98 rdel 101
                rde 
  Pgl001148 140 RDEF 143
                *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-3236134IPR009072Histone-fold
PfamPF008082.2E-2162125IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-3763140IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDQQQPTIPA LPQVGYGTNP YIAPPIGGPP HPQLASYHQQ LQAFWGNQMR EVEQAQDFKT  60
HSLPLARIKK IMKADEDVKM ISAEAPVVFA KACEMFILEL TLRSWIHTEE NKRRTLQKND  120
IAAAIGRTDI FDFLVDIVPR DEFKDEGLVI PRAAGAVPFM GPGDNVPSYY YVAQQAPNMA  180
AYAPPTQQMR SKAPAPPHGS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B2e-4346140197NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.225010.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775725.14e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775726.14e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775727.14e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775728.14e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775729.14e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG75e-69NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA9NKR81e-149A9NKR8_PICSI; Putative uncharacterized protein
TrEMBLB2LSM21e-149B2LSM2_9SPER; HAP5B
STRINGBra003334.1-P6e-69(Brassica rapa)
STRINGBGIOSGA007055-PA1e-68(Oryza sativa Indica Group)
STRINGLOC_Os02g07450.11e-68(Oryza sativa Japonica Group)
STRINGORGLA02G0049900.11e-68(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-70nuclear factor Y, subunit C2