PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG034157.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 489aa    MW: 53842.4 Da    PI: 9.4441
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG034157.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-0595117123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  CCG034157.1  95 FVCEICNKGFQRDQNLQLHRRGH 117
                  89*******************88 PP

2zf-C2H212.20.00055171193123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  CCG034157.1 171 WKCEKCSKIYAVQSDWKAHSKTC 193
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-594117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.05E-694117No hitNo description
SMARTSM003550.01795117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94995117IPR007087Zinc finger, C2H2
PfamPF121717.8E-595117IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM00355260136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.05E-6166191No hitNo description
SMARTSM00355170171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS GTRIQDFGSL NQLASTISPL QQQQQQQQQQ QRTIKKKRNL  60
PGKTIKKKRN LPGNPDPDAE VIALSPKTLL TTNRFVCEIC NKGFQRDQNL QLHRRGHNLP  120
WKLKQRNSKE IKKKAYVCPE PTCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY  180
AVQSDWKAHS KTCGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARLS AHQLIISQNP  240
NAHALLLQNP LQTHHPHSLF STPAHHQISF TSPWDPPHHQ NPCSNNPQNP VHIKPETTGH  300
FQISASLLQE PPLAMPSHKG LLAPTFQSLS NAATSQAPSH HLSATALLQK AASVGATQTS  360
VGHSHMTQLD MGELGSAGQV HVDSVSHVSQ GPSYNLNSLA TWQKSDRLTR DFLGLTAPEC  420
GDHHGHAASN ANGSGGSVNV SMNVREILTY TGGVGFHQQQ YNERDHSLLK PHGGFGFAQP  480
SASEAWGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35167231367Zinc finger protein JACKDAW
5b3h_F3e-35167231367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15468KKKRNLPGKTIKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-119AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012272.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotO227591e-129IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLB9GSI60.0B9GSI6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-125indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]