PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 617aa    MW: 67688.7 Da    PI: 9.1986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033008.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-0584106123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ C+k F r  nL+ H r H
  CCG033008.1  84 FICEVCHKGFQREQNLQLHRRGH 106
                  89*******************88 PP

2zf-C2H212.40.00047160182123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  CCG033008.1 160 WKCEKCSKKYAVQSDWKAHSKTC 182
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.74E-683106No hitNo description
Gene3DG3DSA:3.30.160.603.0E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.67984106IPR007087Zinc finger, C2H2
SMARTSM003550.01684106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355170125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-5148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.74E-6155180No hitNo description
SMARTSM00355140160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAASSSSAPF FGIREEEQNQ QMKQQHSSTP TSSSAQAPPP QKKKRNQPGT PSKYHQFYLK  60
IDLPDPDAEV IALSPMTLMA TNRFICEVCH KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV  120
RRKVYLCPEL TCVHHEPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARNPP TNLNTIGSHL YGSSNMTLGL  240
SQVGTQISSL QDHNNQSTDV LRLGGGGART GQFDHLLPSS IGSSSFRPPQ QMPSPAFFMQ  300
ETNQNYHDEN QSQQDLLQNK PFHHGLMQFA DIHNTTGNPP SAGNLFNLSF LSNSSTASSI  360
SNSNNANNSN SNLPTSGLLM PSHFNNQNGV DGGEGSNVFS NNVMGNQMTS GVPSLYSSSV  420
QNDNMASHMS ATALLQKAAQ MGSSSSNNSA SLLRSFGRDR PLVGGNFSGM FSENENNLHD  480
LMNSFAPGNS SMFGPGHAQE NPYGGYTASR TNLEQEKQHH GPNFGNSNMD EAKLHQSLNA  540
SIGGSDRLTR DFLGVGPQIV RSMSGSSGFS QREKQQQPQR QHHGMDMGGS SLDSERHNAN  600
ISAAPTSQSF GGNRSFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35156217364Zinc finger protein JACKDAW
5b3h_F9e-35156217364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084940.0AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021686.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_011021688.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_011021689.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9ZUL31e-146IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLU5G1I00.0U5G1I0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-122indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]